View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_low_2 (Length: 453)
Name: NF13901_low_2
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 7786877 - 7787099
Alignment:
| Q |
17 |
agtcaacatatgtggctataatttcaatcatacattaactgcatagtcccttaattgatttcaatgtccagccaaccgaggtgaaaccgtagacaaacat |
116 |
Q |
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| T |
7786877 |
agtcaacatatgtgactatataatcaatcatacattaactgcatagtcccttaattgattttaatgtccagccaaccgaggtgaaaccgtagacaaacat |
7786976 |
T |
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| Q |
117 |
acctttttactttcatccatatcagacttgttatccgcagggcgcaggccactatctttgtttacattgtcagaagcatgctattcaatgttgcaaattc |
216 |
Q |
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| T |
7786977 |
acctttttactttcatccatatcagacttgttatccgcagggcgcaggccactatctttgtttacattgtcagaagcatgctattcaatgttgcaaattc |
7787076 |
T |
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| Q |
217 |
aattcctaatattttgacagaca |
239 |
Q |
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| T |
7787077 |
aattcctaatattttgacagaca |
7787099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 308 - 453
Target Start/End: Original strand, 7787168 - 7787313
Alignment:
| Q |
308 |
tcattttgtccacataattcatctcgagagagggacaatcgacggcaacagcatgtgannnnnnnagggggacaacataatttggtggatcaaacataca |
407 |
Q |
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| T |
7787168 |
tcattttgtccacataattcatctcgagagagggacaatcgacggcaacaccatgtgatttttttagggcgacaacataatttggtggatcaaacataca |
7787267 |
T |
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| Q |
408 |
gctgaaatgtaagtatacaacaaatactctcaaacatcagtgcata |
453 |
Q |
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| T |
7787268 |
gctgaaatgtaagtatacaacaaatactctcaaacatcagtgcata |
7787313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 52033148 - 52033094
Alignment:
| Q |
174 |
ttgtttacattgtcagaagcatgctattcaatgttgcaaattcaattcctaatat |
228 |
Q |
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| T |
52033148 |
ttgtttacattgtcagaagcgtgttgttcaatattgcgaatccaattcctaatat |
52033094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 29346474 - 29346522
Alignment:
| Q |
173 |
tttgtttacattgtcagaagcatgctattcaatgttgcaaattcaattc |
221 |
Q |
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| T |
29346474 |
tttgttgacattgtcagaagcatgctgctcaatgttgcgaatccaattc |
29346522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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