View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13901_low_5 (Length: 342)

Name: NF13901_low_5
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13901_low_5
NF13901_low_5
[»] chr4 (5 HSPs)
chr4 (23-141)||(16032574-16032692)
chr4 (52-138)||(56478897-56478983)
chr4 (52-138)||(6980524-6980610)
chr4 (98-138)||(37342028-37342068)
chr4 (62-118)||(34708226-34708282)
[»] chr7 (4 HSPs)
chr7 (44-138)||(39444989-39445083)
chr7 (44-141)||(40722599-40722696)
chr7 (44-138)||(85266-85360)
chr7 (44-117)||(48829730-48829803)
[»] chr3 (7 HSPs)
chr3 (46-138)||(14175690-14175782)
chr3 (46-138)||(54418911-54419003)
chr3 (44-138)||(41828191-41828285)
chr3 (45-138)||(953007-953100)
chr3 (44-138)||(41828014-41828109)
chr3 (82-138)||(50833764-50833821)
chr3 (82-138)||(50842032-50842089)
[»] chr1 (6 HSPs)
chr1 (44-138)||(42772462-42772556)
chr1 (52-138)||(23260957-23261043)
chr1 (44-138)||(47914580-47914674)
chr1 (45-129)||(51854491-51854575)
chr1 (44-127)||(28238169-28238252)
chr1 (101-141)||(50378363-50378404)
[»] chr2 (4 HSPs)
chr2 (52-141)||(12447158-12447247)
chr2 (45-138)||(43800395-43800488)
chr2 (52-138)||(9059860-9059946)
chr2 (98-138)||(25890498-25890538)
[»] chr5 (1 HSPs)
chr5 (52-138)||(29656902-29656988)
[»] chr6 (4 HSPs)
chr6 (45-138)||(29535838-29535931)
chr6 (71-138)||(29535398-29535465)
chr6 (71-138)||(29535628-29535695)
chr6 (64-139)||(8609464-8609540)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-130)||(252232-252318)
[»] chr8 (1 HSPs)
chr8 (44-106)||(9375442-9375504)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 16032574 - 16032692
Alignment:
Q  23 ataagtgaaggatgtgcttactttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaat 122  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16032574 ataagtgaaggatgtgtttactttttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaat 16032673  T
Q  123 aagattaaagagtaagaga 141  Q
    |||||||| ||||||||||    
T  16032674 aagattaaggagtaagaga 16032692  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 56478897 - 56478983
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  56478897 gttatctcacttagcatttagtgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 56478983  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 6980610 - 6980524
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||| || |||||| ||||||||||||||||||||||| |||||||    
T  6980610 gttatctcatttaacatttaatgctgcaactttggagccaaatttttaaggttaaattgttgcaacctaataagattaaggagtaag 6980524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 37342028 - 37342068
Alignment:
Q  98 tagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  37342028 tagggttaagttattgcaacctaataagattaatgagtaag 37342068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 34708282 - 34708226
Alignment:
Q  62 ttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacc 118  Q
    |||||| |||||| |||| |||| |||| |||  |||||||||||||||||||||||    
T  34708282 ttagcaattaatgatgcatttttagagcaaaaaatctagggttaagttgttgcaacc 34708226  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 39445083 - 39444989
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39445083 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 39444989  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 40722696 - 40722599
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaagaga 141  Q
    |||||||  |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  40722696 tttttaggattatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataaaatttaggagtaagaga 40722599  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 85266 - 85360
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| ||||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  85266 tttttagggttatctcacttagcatttaatattgcaattttggagccaaaattctagggttaagttgttgcaacctaataagattaaggagtaag 85360  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 48829803 - 48829730
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaac 117  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48829803 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaac 48829730  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 14175690 - 14175782
Alignment:
Q  46 tttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  14175690 tttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 14175782  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 54419003 - 54418911
Alignment:
Q  46 tttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  54419003 tttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 54418911  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 41828285 - 41828191
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  41828285 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 41828191  T

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Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 953007 - 953100
Alignment:
Q  45 ttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  953007 ttttagggttatctcatttagcatttaatgctgtaatttttgagctaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 953100  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 41828109 - 41828014
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctaggg-ttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| ||||||||||||| || ||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  41828109 tttttagggttatctcacttagcatttaatgttgtaattttggagccaaatttttagggtttaagttgttgcaacctaataagattaaggagtaag 41828014  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 50833821 - 50833764
Alignment:
Q  82 tttggagctaaatttctagggttaagttgttgcaa-cctaataagattaaagagtaag 138  Q
    |||||||| |||||| |||||||||||  |||||| |||||||| |||||||||||||    
T  50833821 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaaagagtaag 50833764  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 50842032 - 50842089
Alignment:
Q  82 tttggagctaaatttctagggttaagttgttgcaa-cctaataagattaaagagtaag 138  Q
    |||||||| |||||| |||||||||||  |||||| |||||||| |||||||||||||    
T  50842032 tttggagccaaatttttagggttaagtgtttgcaaacctaataacattaaagagtaag 50842089  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 42772556 - 42772462
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  42772556 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 42772462  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 23261043 - 23260957
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  23261043 gttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 23260957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 47914580 - 47914674
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  47914580 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagattaaggagtaag 47914674  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 51854491 - 51854575
Alignment:
Q  45 ttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagatta 129  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  51854491 ttttagggttatctcatttagcatttaatgttgcaatcttggagccaaatttctagggttaagttgttgcaacctaataagatta 51854575  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 28238169 - 28238252
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagat 127  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  28238169 tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagat 28238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 50378404 - 50378363
Alignment:
Q  101 ggttaagttgttgcaa-cctaataagattaaagagtaagaga 141  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  50378404 ggtttagttgttgcaaacctaataagattaaagagtaagaga 50378363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 12447158 - 12447247
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaagaga 141  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12447158 gttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagaga 12447247  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 43800395 - 43800488
Alignment:
Q  45 ttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    |||||| ||||||||||||| |||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43800395 ttttagggttatctcatttaacatttaatactgcaatttcggagtcaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 43800488  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 9059860 - 9059946
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||| ||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  9059860 gttatctcacttagcatttaatgctgcaattttagagtcaaatttttagggttaagttgttgcaacctaataagattaaggagtaag 9059946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 25890498 - 25890538
Alignment:
Q  98 tagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  25890498 tagggttaagttgttgcaacctaataagattaaggagtaag 25890538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 29656902 - 29656988
Alignment:
Q  52 gttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  29656902 gttatctcacttagcatttaatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaagagtaag 29656988  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 29535838 - 29535931
Alignment:
Q  45 ttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    |||||| |||||| ||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  29535838 ttttagggttatcacatttagcattaaatgctacaattttggagccaaatttctagggttaaattgttgcaacctaataagattaaggagtaag 29535931  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 29535398 - 29535465
Alignment:
Q  71 aatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29535398 aatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaag 29535465  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 29535628 - 29535695
Alignment:
Q  71 aatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaaagagtaag 138  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29535628 aatgctgcaattttgaagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaag 29535695  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 8609464 - 8609540
Alignment:
Q  64 agcatttaatgctgcaattttggagctaaatttctagggttaagttgt-tgca-acctaataagattaaagagtaaga 139  Q
    |||| ||||||| |||  |||||||| |||||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  8609464 agcaattaatgcagcagatttggagccaaatttctagggttaa-ttgtatgcagacctaataagattaaggagtaaga 8609540  T

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Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 252318 - 252232
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaagttgttgcaacctaataagattaa 130  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| | | ||||||||| | ||||||||||||||||||||||| ||||    
T  252318 tttttagggttatatcacttagcatttaatgctgcaattttgaaaccaaatttctatgattaagttgttgcaacctaataagtttaa 252232  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 9375442 - 9375504
Alignment:
Q  44 tttttagagttatctcatttagcatttaatgctgcaattttggagctaaatttctagggttaa 106  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||| ||||||||||| ||||    
T  9375442 tttttagggttatctcacttagcatttaatgttgcagttttggagccaaatttctaggattaa 9375504  T

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