View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13901_low_6 (Length: 333)

Name: NF13901_low_6
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13901_low_6
NF13901_low_6
[»] chr5 (6 HSPs)
chr5 (63-228)||(36001654-36001822)
chr5 (227-273)||(36001842-36001888)
chr5 (63-131)||(36012872-36012940)
chr5 (63-229)||(36015599-36015763)
chr5 (227-291)||(36013037-36013099)
chr5 (227-276)||(36015795-36015844)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 36001654 - 36001822
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 162  Q
    |||||||||| || ||| | ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  36001654 ccatcaacaacgcttttgctgaccgatcaagtgcattgttgacagttcaaacactttcatcagaactagcttctttacattcacggattgagaagctcga 36001753  T
Q  163 atttgct---tccataatatttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagc 228  Q
    | |||||   |||| |||||||||||||||||||||| || ||  |||||||||||| |||||||||||    
T  36001754 agttgcttcatccagaatatttggtggagacaagtctaggatgcggaaaattgaagaattgaaagaagc 36001822  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 36001842 - 36001888
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcata 273  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36001842 gctaaaatttgtgcagatagagagtatgaacgaatcaaggtaacata 36001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 36012872 - 36012940
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactag 131  Q
    ||||||||||||||  ||||||   || |||||||||||||| |||||||||||||| |||||||||||    
T  36012872 ccatcaacaatgcaacttccgatcaatgaagtgcattgttgatggttcaaacactcttatcagaactag 36012940  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 36015599 - 36015763
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 162  Q
    ||||||| ||||||||||||||| ||||||||||||||  ||  |||||||||      ||||||| | |||||||| ||||||  ||| ||||||||||    
T  36015599 ccatcaataatgcattttccgactgatcaagtgcattggcgatagttcaaaca-----ttcagaac-aacttctttaaattcactaattgagaagctcga 36015692  T
Q  163 atttgct---tccataat-atttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagct 229  Q
    | |||||   |||| ||| |||||  ||||||| |||| |||||  ||||||||||| |||||||||||||    
T  36015693 agttgcttcatccagaataatttgacggagacaggtctaggttgcggaaaattgaagtgttgaaagaagct 36015763  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 36013037 - 36013099
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatagatatattttttgttt 291  Q
    |||||||| |||||||||||||  |||||| ||||||||||| || |||| || |||||||||||    
T  36013037 gctaaaatttgtgcagatagag--tatgaatgaatcaaggtaacaaataggtacattttttgttt 36013099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 36015795 - 36015844
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatag 276  Q
    |||||||| |||| ||||||||| ||| |||||||||||||| |||||||    
T  36015795 gctaaaatttgtgaagatagagaatatcaacgaatcaaggtaacatatag 36015844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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