View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_low_8 (Length: 259)
Name: NF13901_low_8
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_low_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 48532832 - 48533084
Alignment:
| Q |
7 |
gaagaggaagaatttaatttgcataaaatactaatagttggataaacatgannnnnnnaagcacttgactaagctccattcaagcttagaaccgaaaaaa |
106 |
Q |
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| T |
48532832 |
gaagaggaagaatttaatttgcataaaatactaatagttggatgaacatgatttttttaagcacttgcctaagctccattcaagcttagaaccgaaaaaa |
48532931 |
T |
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| Q |
107 |
tggagcttgtaacgattacttaataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaattg |
206 |
Q |
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| T |
48532932 |
tggagcttggaacgatcacttaataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaattg |
48533031 |
T |
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| Q |
207 |
gaatggaagaacaacgaccagaaacaaaagtttgattgagttgatgccaaagc |
259 |
Q |
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| T |
48533032 |
gaatagaagaacaacgaccagaaacaaaagtttgattgagttgatgccaaagc |
48533084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 48535797 - 48535924
Alignment:
| Q |
129 |
ataaagaaagccacaaaattaaatgaaagctataagaaacatacattcatgtataattgattaagttaaaagtaattggaatggaagaacaacgaccaga |
228 |
Q |
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| T |
48535797 |
ataaagaaaaccacacaattaaatgaaagctataagaatcatacattcatatataattgatt-agtgaaaagtaattggaatggaagaacaaccaccaaa |
48535895 |
T |
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| Q |
229 |
aacaaaagtttgattgagttgatgccaaagc |
259 |
Q |
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| T |
48535896 |
aac--aagttttattgagtcgatgcccaagc |
48535924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 48535654 - 48535745
Alignment:
| Q |
17 |
aatttaatttgcataaaatactaatag-ttggataaacatgannnnnnnaagcacttgactaagctccattcaagcttagaaccgaaaaaat |
107 |
Q |
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| T |
48535654 |
aatttaatttgaataaaatactaataggttggatgaacattatttttttaagcacttgcctaagctccattcaagcttagaaccaaaaaaat |
48535745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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