View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13902_high_1 (Length: 697)
Name: NF13902_high_1
Description: NF13902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13902_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 34418065 - 34418732
Alignment:
| Q |
11 |
catcatcaaagaacatgtatgtatacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418065 |
catcatcaaagaacatgtatgtatacataataactgtaaaaacagacaactatctagcaatagcatcatgcaagtccagcctccaatccattgaatgtat |
34418164 |
T |
|
| Q |
111 |
cataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418165 |
cataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgccgcataccgcaaatactccgaacggcaaccaactacctaa |
34418264 |
T |
|
| Q |
211 |
aacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttgcgtcgcactccctagcgctgcgttcctcaccaccgtaggaaacaactctgatgtg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418265 |
aacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttgtgtcgcactccctagcgctgcgttcctcaccaccgtaggaaacaactctgatgtg |
34418364 |
T |
|
| Q |
311 |
taaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaattactttccacacccctacattacccataaaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418365 |
taaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaattactttccacacccctacattacccataaaac |
34418464 |
T |
|
| Q |
411 |
tccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacctatccaataacactgcggttatcgtgaatgctgg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418465 |
tccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacctatccaataacactgcggttatcgtgaatgctgg |
34418564 |
T |
|
| Q |
511 |
catctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaagctaagaccataatacaccaccgaggctaagaaa |
610 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418565 |
catctctgcgactgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaagctaagaccataatacaccaccgaggctaagaaa |
34418664 |
T |
|
| Q |
611 |
ttaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataatggatcc |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418665 |
ttaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataatggatcc |
34418732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 72 - 678
Target Start/End: Original strand, 34430375 - 34430981
Alignment:
| Q |
72 |
agcatcatgcaagtccagcctccaatccattgaatgtatcataaagaggcatattcagtgtctccggcagataaaatgcaaacatcccacctaaaatgcc |
171 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | || |
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| T |
34430375 |
agcatcatgcaagtccagccatcaatcccttaaatgtatcataaagaggcatatttagtgtctccggcagataaaacgcaaacatcccacctattaatcc |
34430474 |
T |
|
| Q |
172 |
gcataccgcaaatactccgaacggcaaccaactacctaaaacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttgcgtcgcactccctagc |
271 |
Q |
| |
|
||| |||||||||| |||||||||||||||| |||||||||||||||||||||| | | |||||||||||| || || ||| ||| |||||||||| |
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| T |
34430475 |
gcacgccgcaaataccccgaacggcaaccaaccacctaaaacgaccacaaaaggcacagatatcgcccccattcttgccgcctgcatcgtactccctagc |
34430574 |
T |
|
| Q |
272 |
gctgcgttcctcaccaccgtaggaaacaactctgatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacacca |
371 |
Q |
| |
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|| || |||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||| || |||||||| |||||||| ||||| ||||| |||| |
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| T |
34430575 |
gccgcattcctcaccaccgtaggaaataactccgtcgtgtaaatatacaacaaattataagtcccagccattccaaatatccccaaaactccacaaacca |
34430674 |
T |
|
| Q |
372 |
atttaattactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttcc |
471 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
34430675 |
ttttaattactttccacacccctacattactcatcaaactccccatcaaacaaaagaatccactaaaccacattgtccctattgtcaatggcttcctccc |
34430774 |
T |
|
| Q |
472 |
aaacctatccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacg |
571 |
Q |
| |
|
|||||||||||| ||||| || ||||||| || || ||||| ||||| |||||||| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
34430775 |
aaacctatccaacaacaccgccgttatcgcaaacgccggcatttctgctaccgcattgaggagcacactcatgtagaggttggtttcgagatttgtaaca |
34430874 |
T |
|
| Q |
572 |
tttaagctaagaccataatacaccaccgaggctaagaaattaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataa |
671 |
Q |
| |
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|||||||||| ||| | ||||| || |||| ||||| |||| || |||||||||||||||||||||||||||||||| ||| ||||||||||| | || |
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| T |
34430875 |
tttaagctaatcccaaagtacacaactgaggtcaagaagttaatagttatcgctagaaataacctaatacgtgtaactgagtaacgaatcacatctacaa |
34430974 |
T |
|
| Q |
672 |
tggatcc |
678 |
Q |
| |
|
||||||| |
|
|
| T |
34430975 |
tggatcc |
34430981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 205 - 597
Target Start/End: Complemental strand, 31613361 - 31612969
Alignment:
| Q |
205 |
acctaaaacgaccacaaaaggcgccaaaatcgcccccatttgcgcggcttgcgtcgcactccctagcgctgcgttcctcaccaccgtaggaaacaactct |
304 |
Q |
| |
|
|||||||||||| |||| || ||||| || || |||||||| || ||||| || |||| ||| || || || ||||| || ||||| || |||||||| |
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| T |
31613361 |
acctaaaacgacaacaactggtgccaatattgcacccatttgtgctgcttgtgtagcacacccaagtgcagcattcctaacaaccgttgggaacaactcc |
31613262 |
T |
|
| Q |
305 |
gatgtgtaaataaacaacaagttataagttcccgccattccgaatatccctaaaacaccacacaccaatttaattactttccacacccctacattaccca |
404 |
Q |
| |
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| || |||||||| | ||| |||||||| || ||||| || ||||| || |||| |||||||||| ||| ||| ||||||||||||| ||| | || |
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| T |
31613261 |
gccgtataaataaagagcaaattataagtccctgccatcccaaatattcccaaaattccacacaccattttcattcctttccacacccccttatttctca |
31613162 |
T |
|
| Q |
405 |
taaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacctatccaataacactgcggttatcgtgaa |
504 |
Q |
| |
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| |||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||| ||||| |||||| ||||||| || | ||| |||||| |||| |
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|
| T |
31613161 |
tcaaactccccacaaaacaaaagaatccactgaaccataatgtccctattgttaatggcttcctcccaaacttatccaacaagattgctgttatcatgaa |
31613062 |
T |
|
| Q |
505 |
tgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaagctaagaccataatacaccac |
597 |
Q |
| |
|
||||||||||| || || || || || | ||||| | ||| || || |||||||||||| ||||||| ||| |||||||| |||||||| |
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|
| T |
31613061 |
cgctggcatctccgccactgcgttgagtattacgttaaggtaaagatttgtttcgaggtttactacgtttaggcttagaccatagtacaccac |
31612969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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