View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13902_high_3 (Length: 392)
Name: NF13902_high_3
Description: NF13902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13902_high_3 |
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| [»] scaffold0524 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 47507488 - 47507828
Alignment:
| Q |
1 |
ggccaacttgagaaggtggctattcacatcacaataattaacttgttatgaatgaacaaactttttattagttgattttaacttctgatatttcagttaa |
100 |
Q |
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| T |
47507488 |
ggccaacttgaggaggtggctattcacatcacaataatttacttgttatgaatgaacaaactttttattagttgattttaacttctgatatttcagttaa |
47507587 |
T |
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| Q |
101 |
cacattaacttagccttttatccacaatacttcgtttcaaaaaagttcggtatgaaaagttggagagaacnnnnnnnaatcaattgatgggagagatgtt |
200 |
Q |
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| T |
47507588 |
cacattaacttagccttttatccacaatacttcgtttcaaaaaagttcggtatgaaaagttggagagaactttttttaatcaattgatgggagagatgtt |
47507687 |
T |
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| Q |
201 |
tcgatcaaatcactgattcaagaaattcataattatgtgatgattgacgagttcttttctattttcaatgggtttatgcgagcatattgaatgcatggtt |
300 |
Q |
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| T |
47507688 |
tcgatcaaatcactgattcaagaaattcataattatgtgatgattgacgagttcttttctattttcaatgggtttatgcgagcatattgaatgcatggtt |
47507787 |
T |
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| Q |
301 |
aataagttcttgtgggtagcaaacaaggcaaacgaaaaatt |
341 |
Q |
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| T |
47507788 |
aataagttcttgtgggtagcaaacaaggcaaacgaaaaatt |
47507828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 367
Target Start/End: Original strand, 7102442 - 7102624
Alignment:
| Q |
179 |
atcaattgatgggagagatgtttcgatcaaatcactgattcaagaaattcataattatgtgatgattgacgagttcttttctattttcaatgggtttatg |
278 |
Q |
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| T |
7102442 |
atcaactgctgggagagaagttttgatcaaatcagtggttcaagctattcatacgtatgtgatga-------gttgttttcgacttccgatgggtttatg |
7102534 |
T |
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| Q |
279 |
cgagcatattgaatgcatggttaataagttcttgtggg-tagcaaacaaggcaaacgaaaaattcattggattaaatgtgagccattatg |
367 |
Q |
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| T |
7102535 |
tgagcatattgaaagtatgattagtaagttctggtggggtagcaaacaaggtgaacgtaaaattcattggattaaatgggagacattatg |
7102624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 3349025 - 3348937
Alignment:
| Q |
268 |
atgggtttatgcgagcatattgaatgcatggttaataagttcttg-tgggtagcaaacaaggcaaacgaaaaattcattggattaaatg |
355 |
Q |
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| T |
3349025 |
atgggtttatgtgagaatattgaatggatgactagtaagttctggttgggtagcaaacaaggtgagtgtaaaatttattggattaaatg |
3348937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 11353 - 11268
Alignment:
| Q |
271 |
ggtttatgcgagcatattgaatgcatggttaataagttcttgtggg-tagcaaacaaggcaaacgaaaaattcattggattaaatg |
355 |
Q |
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| T |
11353 |
ggtttatgtgagcatattgaaagtatgattagtaagttctggtgggttagcaaacatggtgagcgtaaaattcattggattaaatg |
11268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 11792064 - 11791972
Alignment:
| Q |
275 |
tatgcgagcatattgaatgcatggttaataagttcttgt-gggtagcaaacaaggcaaacgaaaaattcattggattaaatgtgagccattatg |
367 |
Q |
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| T |
11792064 |
tatgtgagcatattgaaagaatgattagtaagttcttgtggggtagcaaacaaggtgagcttaaaattcattgg-ttaaatgggagacattatg |
11791972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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