View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13902_high_4 (Length: 264)
Name: NF13902_high_4
Description: NF13902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13902_high_4 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 36173798 - 36173610
Alignment:
| Q |
76 |
ttctccgccaccgccgccgttgtatgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36173798 |
ttctccgccaccgccgccgttgtatgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttat |
36173699 |
T |
|
| Q |
176 |
ggagcggaagatgatttgtcttatgagcgattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttcttttc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36173698 |
ggagcggaagatgatttgtcttatgagcaattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttcttttc |
36173610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 36160485 - 36160309
Alignment:
| Q |
76 |
ttctccgccaccgccgccgttgtatgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttat |
175 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
36160485 |
ttctccgccgccgccgccgctgtatgaagtggaagaaatcctaggatatgagtttaagaacaagcagttattggaagaggctctcacacataccacttac |
36160386 |
T |
|
| Q |
176 |
ggagcggaagatgatttgtcttatgagcgattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagtt |
258 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| | ||||||||||||||| ||||||| | |||| ||||||||| |
|
|
| T |
36160385 |
ggagctgagaatga------ttatgagcgattggaatatgtaggtgatgctgttcttaacttgttgatggcaagggaacagtt |
36160309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 264
Target Start/End: Complemental strand, 17454028 - 17453865
Alignment:
| Q |
99 |
atgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttatggagcggaagatgatttgtctta |
198 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||| ||||||| ||||| |
|
|
| T |
17454028 |
atgaagtggaagcactcataggatatgagtttaagaataagcacttattgaaagaggctttcacac--agcacttatggtgctgaaaatgatttatctta |
17453931 |
T |
|
| Q |
199 |
tgagcgattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttcttttc |
264 |
Q |
| |
|
|||| | |||||| |||| |||| |||| || ||||||| |||||||| ||||||| ||||| |
|
|
| T |
17453930 |
tgagtagtcggaatacatgggagatgttgttattaacttgttgatagcaaagaaacagtttttttc |
17453865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 263
Target Start/End: Original strand, 17454482 - 17454644
Alignment:
| Q |
99 |
atgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttatggagcggaagatgatttgtctta |
198 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |
|
|
| T |
17454482 |
atgaagtggaagcactcataggatatgagtttaagaataaacacttattggaagaggctttcacac--agcacttatggtgctgaaaatgacttatctta |
17454579 |
T |
|
| Q |
199 |
tgagcgattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttctttt |
263 |
Q |
| |
|
|||| | |||||| |||| | || ||||||| ||||||| |||||||| ||||||| |||| |
|
|
| T |
17454580 |
tgagtagtcggaatacgtgggaggtgttgttcttaacttgttgatagcaaagaaacagttttttt |
17454644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 264
Target Start/End: Complemental strand, 10489054 - 10488890
Alignment:
| Q |
99 |
atgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttatggagcggaagatgatttgtctta |
198 |
Q |
| |
|
|||||||||||||||| || ||||||| || |||||||| | |||||||||||||||||||||||||||||||| | || ||| |||| | ||||| |
|
|
| T |
10489054 |
atgaagtggaagcaatcatatgatatgatttcaagaataaaaa-ttattggaagaggctttcacacatagcacttacagtgctgaaaatgacatatctta |
10488956 |
T |
|
| Q |
199 |
tgagcgattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttcttttc |
264 |
Q |
| |
|
| |||| |||||||| | ||||||| ||||||| ||||||| ||| ||||||||| || ||||| |
|
|
| T |
10488955 |
taagcggttggaatacgtcggtgatgttgttcttaacttgttgatagaaaaggaacaatttttttc |
10488890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 10489538 - 10489596
Alignment:
| Q |
145 |
attggaagaggctttcacacatagcacttatggagcggaagatgatttgtcttatgagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||| |||| || |||||||||| |
|
|
| T |
10489538 |
attggaagaggctttcacacatagcacttacggtgttgaaaatgacttatcttatgagc |
10489596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University