View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13902_low_2 (Length: 542)
Name: NF13902_low_2
Description: NF13902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13902_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 31467610 - 31468132
Alignment:
| Q |
19 |
agattgcactctacattttgttgttttaggttatctatgttttgtcactccttttgattttggattgtcattcaaaattcagtgnnnnnnnttgtctatg |
118 |
Q |
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| T |
31467610 |
agattgcactctacattttgttgttttaggttatctatgttttgtcactccttttgattttggattgtcattcaaaattcagtgaaaaaaattgtctatg |
31467709 |
T |
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| Q |
119 |
tttatattttactatgacaaacaataaagtaccaaggtcaattaatcacttttgaaggtagaattgtatcaaccgcaaattgtttttagattttacgcat |
218 |
Q |
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| T |
31467710 |
tttatattttactatgacaaacaataaagtaccaaggtcaattaatcacttttgaaggtagaattgtatcaaccgcaaattgtttttagattttacgcat |
31467809 |
T |
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| Q |
219 |
ggccaactctttgttgttgtattagagtaaaagaagnnnnnnnncatgattgaatatgttgacgttgttgcagcatgatagatatttgacaagtgtatta |
318 |
Q |
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| T |
31467810 |
ggccaactctttgttgttgtattagagtaaaagaagaaaaaaa-catgattgaatatgttgatgttgttgcagcatgatagatatttgacaagtgtacta |
31467908 |
T |
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| Q |
319 |
aactattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagtattattaaatttgggttg |
418 |
Q |
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| T |
31467909 |
aactattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagttgtattaaatttgggttg |
31468008 |
T |
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| Q |
419 |
tcttaggcaattggtttgattgcataaaaataatagaaactgcgattaagttggtttgaaaattaggttagacagatgattaagccttcaaatcctctat |
518 |
Q |
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| T |
31468009 |
ccctaggcaattggtttgattgcataaaaataatagaaactacgattaagttggtttgaaaattaggttaaacagatgattaagccttcgaatcctttat |
31468108 |
T |
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| Q |
519 |
tgctcattataaaacaatttgctc |
542 |
Q |
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| T |
31468109 |
tgctcattgtaaaacaatttgctc |
31468132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 540
Target Start/End: Original strand, 24384925 - 24385173
Alignment:
| Q |
294 |
tgatagatatttgacaagtgtattaaa-ctattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaat |
392 |
Q |
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| T |
24384925 |
tgatagatatttggcaagtgtaccaaaactatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttagcaatttctttaat |
24385024 |
T |
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| Q |
393 |
gtaaaagtattattaaatttgggttgtcttaggcaattggtttgattgcataaaaataatagaaactgcgatt-aagttggtttgaaaattaggttagac |
491 |
Q |
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| T |
24385025 |
gtgaatgatctattaaattggggtttcccaaggcagatgttttgtttgcataaaagtaagaaaaagtgcgattaaagttggtctggtaattaggtttaac |
24385124 |
T |
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| Q |
492 |
agatgattaagccttcaaatcctctattgctcattataaaacaatttgc |
540 |
Q |
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| T |
24385125 |
aagtgatcaagccttcaaatcctctactgctcattgtaaattaatttgc |
24385173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 32074156 - 32074260
Alignment:
| Q |
294 |
tgatagatatttgacaagtgtattaaact-attgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaat |
392 |
Q |
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| T |
32074156 |
tgatagatatttgacaagtataccaaaattatcgaagtaataataataaatttgtatccacgatggttgttgttaatttctacttagaaatttcattaat |
32074255 |
T |
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| Q |
393 |
gtaaa |
397 |
Q |
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||||| |
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| T |
32074256 |
gtaaa |
32074260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 524
Target Start/End: Complemental strand, 40139311 - 40139249
Alignment:
| Q |
463 |
attaagttggtttgaaaattaggttaga-cagatgattaagccttcaaatcctctattgctca |
524 |
Q |
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| T |
40139311 |
attaagttggtttgaaaattatattaaaacaaatgatcaagccttcgaatcctctattgctca |
40139249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 447
Target Start/End: Complemental strand, 46542644 - 46542535
Alignment:
| Q |
338 |
ttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagtattattaaatttgggttgtcttaggcaattggtttga |
437 |
Q |
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| T |
46542644 |
ttaaattcgtatctacgaggactgttattaatttctatttagcaatttcattaatgtaaaagatgtattaaattggggttgccctaggcagttggtttgt |
46542545 |
T |
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| Q |
438 |
ttgcataaaa |
447 |
Q |
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| T |
46542544 |
ttgcataaaa |
46542535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 485
Target Start/End: Original strand, 28974136 - 28974331
Alignment:
| Q |
294 |
tgatagatatttgacaagtgtatt--aaactattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaa |
391 |
Q |
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| T |
28974136 |
tgatagatatttggcaagtgtatccaaaactatcgaagtaataataataaatctgtatccacgaggattgttgttaatgtcaacttagcaatttcaggaa |
28974235 |
T |
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| Q |
392 |
tgtaaaagtattatta-aatttgggttgtcttaggcaattggtttgattgcataaaaataatagaaactgcgatt-aagttggtttgaaaattagg |
485 |
Q |
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| T |
28974236 |
tgtataggatgtattataattggggttgtcctaagcaattggtttaattgcataaaagtaagaaaaagtgcgattaaacttggtttgtaaattagg |
28974331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 3861953 - 3862002
Alignment:
| Q |
341 |
aattagtatccacgagaattgttactaatttctacttagcaattgcatta |
390 |
Q |
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|||| ||||||||||| ||||||| ||| ||||||||||||||| ||||| |
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| T |
3861953 |
aatttgtatccacgaggattgttattaacttctacttagcaatttcatta |
3862002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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