View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13902_low_4 (Length: 275)
Name: NF13902_low_4
Description: NF13902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13902_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 46240162 - 46239900
Alignment:
| Q |
13 |
catccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactca |
112 |
Q |
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| T |
46240162 |
catccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactca |
46240063 |
T |
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| Q |
113 |
ccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctg |
212 |
Q |
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| T |
46240062 |
cactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctg |
46239963 |
T |
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| Q |
213 |
ttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccat |
275 |
Q |
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| T |
46239962 |
tttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccat |
46239900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 23541541 - 23541295
Alignment:
| Q |
28 |
ccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggac |
127 |
Q |
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| T |
23541541 |
cctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcat |
23541442 |
T |
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| Q |
128 |
acactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgc |
227 |
Q |
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| T |
23541441 |
tcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagc |
23541342 |
T |
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| Q |
228 |
cctacctttggtgatacccactgcatgattcgtcctcatgtcatcca |
274 |
Q |
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| T |
23541341 |
cctacccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 3437317 - 3437537
Alignment:
| Q |
13 |
catccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactca |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3437317 |
catccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactca |
3437416 |
T |
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| Q |
113 |
ccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctg |
212 |
Q |
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| T |
3437417 |
cactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctg |
3437516 |
T |
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| Q |
213 |
ttttgctttccacgccctacc |
233 |
Q |
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||||||||||||||||||||| |
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| T |
3437517 |
ttttgctttccacgccctacc |
3437537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 3437534 - 3437564
Alignment:
| Q |
242 |
tacccactgcatgattcgtcctcatgtcatc |
272 |
Q |
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| T |
3437534 |
tacccactgcatgattcgtcctcatgtcatc |
3437564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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