View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13903_high_2 (Length: 901)
Name: NF13903_high_2
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13903_high_2 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 2638815 - 2638313
Alignment:
| Q |
19 |
gtttcagcataaactttggattattccagaggctccaactacgtgtggtaaggctgaactctttatgtattctcctgccttaagcccattccacatttgg |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2638815 |
gtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgccttaagcccattccacatttgg |
2638716 |
T |
|
| Q |
119 |
ggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgctttgaaaattgttctagaatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638715 |
ggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgctttgaaaattgttctagaatga |
2638616 |
T |
|
| Q |
219 |
gtgaagctcatttttctatcgcttccaatttcaagactcatttggttgattacatcggtgaaagaggagacaatgtaccaaggcttttttctaggttgcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638615 |
gtgaagctcatttttctatcgcttccaatttcaagactcatttggttgattacatcggtgaaagaggagacaatgtaccaaggcttttttctaggttgcc |
2638516 |
T |
|
| Q |
319 |
tgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattcgcagggagcaagaaaatgtttgggga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2638515 |
tgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaaatgtttgggga |
2638416 |
T |
|
| Q |
419 |
tcaggtccggctgtgctgaactgtgttttccagtaggtttgctgctgcgggatgggttgcgggctgctgttcggtttcagtctgctattgttgtagcagt |
518 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638415 |
tcaggtccggctgtgctgaactgtgttttccagga-gtttgctgctgcgggatgggttgcgggctgctgttcggtttcagtctgctattgttgtagcagt |
2638317 |
T |
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| Q |
519 |
gtgt |
522 |
Q |
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|||| |
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| T |
2638316 |
gtgt |
2638313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 669 - 884
Target Start/End: Complemental strand, 2638184 - 2637966
Alignment:
| Q |
669 |
ccaattgcatgcgtctgtgtttggctcaccttgtatttgttcgtttcttgcgcctcttgctcgtcttgagctaggttgtgtttctaataatatttagccg |
768 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2638184 |
ccaattgcatgcgtctgtgtttggctcaccttgtatttgttcgtttcttgcgcctcttgctcgtcttgagctaggttgtgtttctaataatatttagccg |
2638085 |
T |
|
| Q |
769 |
tttcaaaaga---agaaaaaatcactgtactagcagagaaaagtaagaggatataaataatgtacatccaaaaaatggctttgaagtcaaattcgtacac |
865 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2638084 |
tttcaaaagaagaagaaaaaatccctgtactagcagagaaaagtaagaggatataaataatgtacatccaaaaaatggctttgaagtcgaactcgtacac |
2637985 |
T |
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| Q |
866 |
taagtgctcatctttatct |
884 |
Q |
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||||||||||||||||||| |
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| T |
2637984 |
taagtgctcatctttatct |
2637966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 2627085 - 2626843
Alignment:
| Q |
19 |
gtttcagcataaactttggattattccagaggctccaactacgtgtggtaaggctgaactctttatgtattctcctgccttaagcccattccacatttgg |
118 |
Q |
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||||||| ||||| ||| |||||||||||| ||| || |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
2627085 |
gtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttgg |
2626986 |
T |
|
| Q |
119 |
ggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgctttgaaaattgttctagaatga |
218 |
Q |
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||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
2626985 |
ggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgctttgaaaattgttctagaatga |
2626886 |
T |
|
| Q |
219 |
gtgaagctcatttttctatcgcttccaatttcaagactcattt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626885 |
gtgaagctcatttttctatcgcttccaatttcaagactcattt |
2626843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 2626841 - 2626739
Alignment:
| Q |
308 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattcgcagggagcaagaaa |
407 |
Q |
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||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
2626841 |
tctagtttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
2626742 |
T |
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| Q |
408 |
atg |
410 |
Q |
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||| |
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| T |
2626741 |
atg |
2626739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 44003837 - 44004006
Alignment:
| Q |
87 |
attctcctgccttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaat--- |
183 |
Q |
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||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||| | | || | |||| ||||| ||||||| || || || |
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| T |
44003837 |
attctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatggt |
44003936 |
T |
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| Q |
184 |
-----agttgatatctgctttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatt |
248 |
Q |
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| T |
44003937 |
tgataacttgatatctgctttggaaagtgttctagaattagtgaagctcacttttcgatttcttccaatt |
44004006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 813 - 884
Target Start/End: Original strand, 2657907 - 2657977
Alignment:
| Q |
813 |
aggatataaataatgtacatccaaaaaatggctttgaagtcaaattcgtacactaagtgctcatctttatct |
884 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||||||||| |
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| T |
2657907 |
aggatataaataatgtacata-aaaaaatggctttgaagtcaaactcataaactgagtgctcatctttatct |
2657977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 807 - 884
Target Start/End: Complemental strand, 36308 - 36231
Alignment:
| Q |
807 |
agtaagaggatataaataatgtacatccaaaaaatggctttgaagtcaaattcgtacactaagtgctcatctttatct |
884 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||| |
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| T |
36308 |
agtaataggatataaataatgtacatccaaaaaatggctatgaagtcaaactcgtaaactaagtgctcgtctttatct |
36231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 746
Target Start/End: Original strand, 14719623 - 14719672
Alignment:
| Q |
697 |
ccttgtatttgttcgtttcttgcgcctcttgctcgtcttgagctaggttg |
746 |
Q |
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||||||||||||||| |||||||||| |||| |||||||||||| ||||| |
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| T |
14719623 |
ccttgtatttgttcggttcttgcgccccttgttcgtcttgagcttggttg |
14719672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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