View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13903_high_7 (Length: 466)
Name: NF13903_high_7
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13903_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 230 - 444
Target Start/End: Original strand, 35787564 - 35787778
Alignment:
| Q |
230 |
accattagatatgtgcacattggtttgggaatttggaatcatttaaattttgttgattttttatttcttgaccttgatagtcaggttttctctttcgagg |
329 |
Q |
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| T |
35787564 |
accattagatatgtgcacattggtttgggaatttggaatcatttaaattttgttgattttttatttcttgaccttgatagtcaggttttctctttcgagg |
35787663 |
T |
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| Q |
330 |
atggtgtgttatttgggataaatttaattcctaggcgattacaactaattcctaggtaactaattaatgcatgacattagtgctagctaccacctaaggt |
429 |
Q |
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| T |
35787664 |
atggtgtgttatttgggataaagttaattcctaggcgattacaactaattcctaggtaactaattaatgcatgacattagtgctagctaccacctaaggt |
35787763 |
T |
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| Q |
430 |
tgaacatgttttagt |
444 |
Q |
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| T |
35787764 |
tgaacatgttttagt |
35787778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 35787340 - 35787538
Alignment:
| Q |
13 |
gagatgaatgaaaaaagaaaagatggagagtgactacttggttacctcgttcagtgttattgtttcttctgtgatgaaatgaaagtggtttcaatgttaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787340 |
gagatgaatgaaaaaagaaaagatggagagtgactacttggttacctcgttcagtgttattgtttcttctgtgatgaaatgaaagtggtttcaatgttaa |
35787439 |
T |
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| Q |
113 |
tggtggaatagggcggttgtgcaattttgttta--tttttatatatgagagagagtaatgaatgaaagggattgttttgctttgtaagtgaataaagaa |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787440 |
tggtggaatagggcggttgtgcaattttgtttatttttttatatatgagagagagtaatgaatgaaagggattgttttgctttgtaagtgaataaagaa |
35787538 |
T |
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