View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13903_low_1 (Length: 966)

Name: NF13903_low_1
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13903_low_1
NF13903_low_1
[»] chr5 (4 HSPs)
chr5 (585-933)||(6227557-6227906)
chr5 (65-496)||(6227993-6228433)
chr5 (612-831)||(6223087-6223330)
chr5 (206-257)||(6229617-6229668)
[»] chr2 (2 HSPs)
chr2 (123-175)||(17980740-17980792)
chr2 (135-176)||(17984562-17984603)
[»] scaffold0009 (1 HSPs)
scaffold0009 (65-108)||(53670-53713)
[»] chr4 (3 HSPs)
chr4 (65-111)||(49574861-49574907)
chr4 (63-108)||(29306338-29306383)
chr4 (65-111)||(376190-376236)
[»] chr1 (3 HSPs)
chr1 (135-176)||(25380599-25380640)
chr1 (132-175)||(24592133-24592176)
chr1 (132-174)||(13332550-13332592)
[»] chr7 (3 HSPs)
chr7 (132-176)||(12153289-12153333)
chr7 (74-108)||(496908-496942)
chr7 (71-108)||(33744215-33744252)
[»] chr3 (2 HSPs)
chr3 (65-108)||(49758448-49758491)
chr3 (62-111)||(21078634-21078683)
[»] scaffold0830 (1 HSPs)
scaffold0830 (65-110)||(684-729)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 585 - 933
Target Start/End: Complemental strand, 6227906 - 6227557
Alignment:
Q  585 atcatgagataaagattatttttctatttaaaaacaaaataggtatgattcttaaacttaattcaaaatttaaaaagaatattattcatgcagaaataat 684  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227906 atcatgagataaagattttttttcaatttaaaaacaaaataggtatgattcttaaacttaattcaaaatttaaaaagaatattattcatgcagaaataat 6227807  T
Q  685 gatttcagagacttatcagaagagttttgagtttacaatcaataagtaataatgcttataaccacactcctaatatatacttcattggacatgtttgaac 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227806 gatttcagagacttatcagaagagttttgagtttacaatcaataagtaataatgcttataaccacactcctaatatatacttcattggacatgtttgaac 6227707  T
Q  785 tttccatatatggtatgaaataggaatcttcaaaacataaaggaataaactgaactt-aaaagataaatttctgttgtcaaaaaagtacataaggatcca 883  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6227706 tttccatatatgttaggaaataggaatcttcaaaacataaaggaataaactgaacttaaaaagataaatttctgttgtcaaaaaagtacataaggatcca 6227607  T
Q  884 tagtacagatgcaagcaaaaagaagaaacaactatcatttaacgtaaaca 933  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6227606 tagtacagatgcaagcaaaaagaagaaacaactatcatttaacgtaaaca 6227557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 65 - 496
Target Start/End: Complemental strand, 6228433 - 6227993
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaaatacaacctaaaatcacattaaccacatttgaattcaatcaagtgtcaatttatca 164  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6228433 ttatagaaaaatttgtttgaggatataattgaaataatgaaaaaatacgacctaaaatcatattaaccacatttgaattcaatctagtgtcaatttatca 6228334  T
Q  165 aacacatata--------ccataacataaatctattatc---ccatagacacacttactaactagcagccgacatcaactaataaataatgatgactaac 253  Q
    ||||||||||        |||||||||||||||||||||   ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6228333 aacacatatagtcatataccataacataaatctattatctatccatagacacatttactaactagcaaccgacatcaactaataaataatgatgactaac 6228234  T
Q  254 ctatnnnnnnnnnntatcttgaacaagagattttaatcaaattttatggatcatggatatatcattgagtttgagttgaaatcnnnnnnnnnnnnnnnaa 353  Q
    ||||           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||               ||    
T  6228233 ctataaaaaaaaa--atcttgaacaagagattttaatcaaattggatggatcatggatatatcattgagtttgagttgaaatcttttttttcttttttaa 6228136  T
Q  354 gttaaaatcttaactacatacaataaatttctttgagaggacatacgataactctgtaaatatttattttggtagtttcgtttcattatgtgatcgttgt 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6228135 gttaaaatcttaactacatacaataaatttctttgagaggacatacgataactctgtaaatatttattttggtagtttcgtttcattatgtgatcgttgt 6228036  T
Q  454 tttatttttggacggaaattaattaggtgattcttatcaagaa 496  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6228035 tttatttttggacggaaattaattaggtgattcttatcaagaa 6227993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 612 - 831
Target Start/End: Complemental strand, 6223330 - 6223087
Alignment:
Q  612 ttaaaaacaaaataggtatgattcttaaacttaattcaaaatttaaaaagaa---------tattattcatgcagaaataatgatttcagagacttatca 702  Q
    |||||||||||||||  || |  |||||||||||||||||||||||||||||         || ||||||||||||||||||||||||| || |||| ||    
T  6223330 ttaaaaacaaaatagacatcaaccttaaacttaattcaaaatttaaaaagaactaaaggaataatattcatgcagaaataatgatttcaaaggcttagca 6223231  T
Q  703 gaagagttttgagtttacaatcaataagtaataatgcttataaccacactcctaa----------------ta-tatacttcattgga-catgtttgaac 784  Q
    ||||||||||||| ||   |||||| |   ||||||||||||| |||||||||||                || |||||||||| | | | ||||||| |    
T  6223230 gaagagttttgagcttgttatcaatga---ataatgcttataatcacactcctaaagtcctggtgaaagagtactatacttcatggaaacgtgtttgacc 6223134  T
Q  785 tttccatatatggtatgaaataggaatcttcaaaacataaaggaata 831  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6223133 tttccatatatggtaggaaataggaatcttcaaaacataaaggaata 6223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 6229668 - 6229617
Alignment:
Q  206 acttactaactagcagccgacatcaactaataaataatgatgactaacctat 257  Q
    ||||||||| ||| | ||||||||||| |||||||||| |||||||||||||    
T  6229668 acttactaaatagtaaccgacatcaacgaataaataataatgactaacctat 6229617  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 17980740 - 17980792
Alignment:
Q  123 cacattaaccacatttgaattcaatcaagtgtcaatttatcaaacacatatac 175  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||||||||||    
T  17980740 cacattgatcacatttgaattcaattgagtgtcaatttatcaaacacatatac 17980792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 17984562 - 17984603
Alignment:
Q  135 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 176  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  17984562 atttgaattcaatctagtgtcaatatatcaaacacatatacc 17984603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 53713 - 53670
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 108  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  53713 ttatagaaaaatttgtttaaagatataattgaaataatgaaaaa 53670  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 49574907 - 49574861
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 111  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  49574907 ttatagaaaaatttgtttaaagatataattgaaacaatgaaaaaata 49574861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 29306338 - 29306383
Alignment:
Q  63 ttttatagaaaaatttattttaagatataattgaaataatgaaaaa 108  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  29306338 ttttatagaaaaatttgttcaaagatataattgaaataatgaaaaa 29306383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 376236 - 376190
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 111  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  376236 ttatagaaaaaattatttaaagatataattgggataatgaaaaaata 376190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 25380599 - 25380640
Alignment:
Q  135 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 176  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  25380599 atttgaattcaatccaatgtcaatttatcaaacacatatacc 25380640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 24592176 - 24592133
Alignment:
Q  132 cacatttgaattcaatcaagtgtcaatttatcaaacacatatac 175  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||    
T  24592176 cacatttggattcaatctagtgttaatttatcaaacacatatac 24592133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 13332592 - 13332550
Alignment:
Q  132 cacatttgaattcaatcaagtgtcaatttatcaaacacatata 174  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  13332592 cacatttaaattcaatcaagtctcaattcatcaaacacatata 13332550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 12153333 - 12153289
Alignment:
Q  132 cacatttgaattcaatcaagtgtcaatttatcaaacacatatacc 176  Q
    |||||||||||| |||| | |||||||||||||||||||||||||    
T  12153333 cacatttgaatttaatctattgtcaatttatcaaacacatatacc 12153289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 496942 - 496908
Alignment:
Q  74 aatttattttaagatataattgaaataatgaaaaa 108  Q
    ||||||||| |||||||||||||||||||||||||    
T  496942 aatttatttaaagatataattgaaataatgaaaaa 496908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 33744252 - 33744215
Alignment:
Q  71 aaaaatttattttaagatataattgaaataatgaaaaa 108  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  33744252 aaaaatttatttaaagatataattgcaataatgaaaaa 33744215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 49758448 - 49758491
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 108  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||    
T  49758448 ttatagaaaaatttgtttaaaggtataattgaaataatgaaaaa 49758491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 21078683 - 21078634
Alignment:
Q  62 tttttatagaaaaatttattttaagatataattgaaataatgaaaaaata 111  Q
    |||||||||||||| || ||| | | ||||||||||||||||||||||||    
T  21078683 tttttatagaaaaagttgtttaagggtataattgaaataatgaaaaaata 21078634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 729 - 684
Alignment:
Q  65 ttatagaaaaatttattttaagatataattgaaataatgaaaaaat 110  Q
    ||||||||||| | |||| ||||||||||||| |||||||||||||    
T  729 ttatagaaaaaataatttaaagatataattgagataatgaaaaaat 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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