View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13903_low_10 (Length: 412)

Name: NF13903_low_10
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13903_low_10
NF13903_low_10
[»] chr7 (17 HSPs)
chr7 (18-400)||(1914248-1914630)
chr7 (241-309)||(8094362-8094430)
chr7 (235-309)||(36598302-36598376)
chr7 (228-273)||(43250681-43250726)
chr7 (235-303)||(33894677-33894745)
chr7 (242-273)||(9038168-9038199)
chr7 (235-302)||(36537958-36538025)
chr7 (235-273)||(11047917-11047955)
chr7 (251-293)||(17944304-17944346)
chr7 (235-273)||(43219626-43219664)
chr7 (235-273)||(43219786-43219824)
chr7 (231-267)||(425812-425848)
chr7 (235-307)||(20553153-20553225)
chr7 (249-309)||(21073201-21073261)
chr7 (235-303)||(25670538-25670606)
chr7 (194-306)||(28691785-28691896)
chr7 (241-273)||(28702805-28702837)
[»] chr6 (8 HSPs)
chr6 (235-293)||(33089556-33089614)
chr6 (242-301)||(34538172-34538231)
chr6 (235-273)||(696492-696530)
chr6 (235-273)||(696652-696690)
chr6 (223-273)||(10616695-10616745)
chr6 (235-273)||(31624140-31624178)
chr6 (241-302)||(27693392-27693453)
chr6 (241-293)||(20368142-20368194)
[»] chr1 (13 HSPs)
chr1 (235-309)||(10199354-10199428)
chr1 (223-272)||(38170673-38170722)
chr1 (235-293)||(38001646-38001704)
chr1 (194-271)||(24460391-24460468)
chr1 (200-273)||(35925705-35925778)
chr1 (236-303)||(3224474-3224541)
chr1 (235-302)||(31517693-31517760)
chr1 (235-309)||(32515387-32515461)
chr1 (235-272)||(7262501-7262538)
chr1 (200-265)||(27140493-27140558)
chr1 (177-294)||(34290229-34290345)
chr1 (242-278)||(37811909-37811945)
chr1 (177-269)||(45205061-45205152)
[»] chr8 (5 HSPs)
chr8 (194-302)||(11569410-11569518)
chr8 (237-309)||(16162812-16162884)
chr8 (194-266)||(779050-779122)
chr8 (235-293)||(8629506-8629564)
chr8 (235-267)||(2594985-2595017)
[»] chr3 (10 HSPs)
chr3 (237-309)||(44014744-44014816)
chr3 (235-302)||(24785311-24785378)
chr3 (235-309)||(1810027-1810101)
chr3 (235-309)||(2304217-2304291)
chr3 (235-273)||(5391929-5391967)
chr3 (235-273)||(39723222-39723260)
chr3 (235-273)||(39723382-39723420)
chr3 (235-273)||(45541621-45541659)
chr3 (244-308)||(49465612-49465676)
chr3 (235-271)||(54837018-54837054)
[»] chr4 (4 HSPs)
chr4 (235-286)||(37863923-37863974)
chr4 (228-273)||(1137755-1137800)
chr4 (245-301)||(36577496-36577552)
chr4 (224-265)||(19304965-19305006)
[»] chr2 (17 HSPs)
chr2 (238-273)||(43827935-43827970)
chr2 (201-266)||(1056118-1056183)
chr2 (177-293)||(1625893-1626009)
chr2 (235-303)||(8017484-8017552)
chr2 (235-302)||(787382-787449)
chr2 (242-309)||(4350747-4350814)
chr2 (223-302)||(5902502-5902581)
chr2 (235-278)||(32614925-32614968)
chr2 (250-293)||(41293124-41293167)
chr2 (235-301)||(19977997-19978063)
chr2 (235-273)||(28677641-28677679)
chr2 (194-272)||(35378999-35379077)
chr2 (235-273)||(40158768-40158806)
chr2 (241-302)||(1801724-1801785)
chr2 (238-307)||(12313121-12313190)
chr2 (241-302)||(24347778-24347839)
chr2 (239-267)||(29316763-29316791)
[»] chr5 (7 HSPs)
chr5 (235-293)||(39248149-39248207)
chr5 (177-273)||(2568651-2568746)
chr5 (177-303)||(10272383-10272508)
chr5 (233-302)||(10152382-10152451)
chr5 (194-283)||(11707064-11707153)
chr5 (194-307)||(17258831-17258944)
chr5 (235-303)||(12459953-12460021)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 1914248 - 1914630
Alignment:
Q  18 ctggtttagttttaagttgaaaacatagaggtgttgttatgaatgtatatgattcggttgctctgtttttcatttgcaggtttcttcagctcctatggag 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1914248 ctggtttagttttaagttgaaaacatagaggcgttgttatgaatgtatatgattctgttgctctgtttttcatttgcaggtttcttcagctcctatggag 1914347  T
Q  118 cagattcttcagaggttacaagcatttggtgaatttgaggtacgtaaacaaactatttttataagttataagttgtttttcctaagctatcatgtagagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1914348 cagattcttcagaggttacaagcatttggtgaatttgaggtacgtaaacaaactatttttataagttataagttgtttttcgtaagctatcatgtagagt 1914447  T
Q  218 ttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtagcaggagta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1914448 ttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttacgttagtagcaggagta 1914547  T
Q  318 tattgtactgtttctttggggtggccttggctgccccgcttatttatttttaaatatttttattggttagtgttcttaagtat 400  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1914548 tattgtattgtttctttggggtggccttggctgccccgcttatttatttttaaatatttttattggttagtgttcttaagtat 1914630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 8094362 - 8094430
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    ||||| |||||||||||||||||||| ||||   |||| |||||||||||||| |||||||| ||||||    
T  8094362 cttataaacatgtcataagctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtag 8094430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 36598376 - 36598302
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    ||||| ||||||||||||||||||| |||||  |||||  |||| ||| | |||||||||||||||||| |||||    
T  36598376 aaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtag 36598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 43250726 - 43250681
Alignment:
Q  228 aaactggaaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||    
T  43250726 aaactgaaaacaacttacgaacatgtcataagctgttttcataagt 43250681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 33894677 - 33894745
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgt 303  Q
    |||||||||||| |||||||||| |||||||| |||||  |||  ||| |||||||||| |||||||||    
T  33894677 aaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgt 33894745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 9038168 - 9038199
Alignment:
Q  242 ttatgaacatgtcataagctgtttttataagt 273  Q
    ||||||||||||||||||||||||||||||||    
T  9038168 ttatgaacatgtcataagctgtttttataagt 9038199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 36537958 - 36538025
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||||||||||||||||||||||| |||||  |||||| |||| ||| | |||||||| || |||||    
T  36537958 aaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 11047917 - 11047955
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  11047917 aaacagcttatgaacatgtcataagttgtttttataagt 11047955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 17944346 - 17944304
Alignment:
Q  251 tgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  17944346 tgtcataagctgtttttataagttgtctgaaacagtctcacaa 17944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 43219664 - 43219626
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  43219664 aaacagcttatgaacatgtcataagctgttttgataagt 43219626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 43219824 - 43219786
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  43219824 aaacagcttatgaacatgtcataagctgttttcataagt 43219786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 425848 - 425812
Alignment:
Q  231 ctggaaacaacttatgaacatgtcataagctgttttt 267  Q
    ||||||| | |||||||||||||||||||||||||||    
T  425848 ctggaaatagcttatgaacatgtcataagctgttttt 425812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 20553153 - 20553225
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagt 307  Q
    |||||||||||||||||||| ||||||||||  |||||  |||   || |||||||||| |||||||| ||||    
T  20553153 aaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttatgctagt 20553225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 21073201 - 21073261
Alignment:
Q  249 catgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    |||||||||  || |||| ||| |||||  ||||||||||||||||||||||||| |||||    
T  21073201 catgtcatagactattttcataggtgcttcgaaatagtctcacaattgcttatgtcagtag 21073261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 25670606 - 25670538
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgt 303  Q
    |||||| |||| ||||||||||||| |||||| ||||||  ||| ||| ||||||||||  ||||||||    
T  25670606 aaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgt 25670538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 28691896 - 28691785
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||| ||||||||| || |||  |||  |||| ||||||  ||||| ||||| ||| ||||||||||||||| |||||  ||| | || ||||||||||    
T  28691896 ttttcataagctatcctggagatcttatgaaaataaactgataacaatttatggacaagtcataagctgttttcataagatctccg-aacagtctcacaa 28691798  T
Q  294 ttgcttatgttag 306  Q
     ||||||||||||    
T  28691797 atgcttatgttag 28691785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 28702805 - 28702837
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagt 273  Q
    ||||||||||||||||||| |||||||||||||    
T  28702805 cttatgaacatgtcataagttgtttttataagt 28702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 33089556 - 33089614
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||    
T  33089556 aaacaacttataaacatgtcctaagctgttttcataagttctctgaaatagtctcacaa 33089614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 34538231 - 34538172
Alignment:
Q  242 ttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttat 301  Q
    ||||| ||||||| |||||||||||||||||  |||| |||||||||||||| |||||||    
T  34538231 ttatggacatgtcgtaagctgtttttataagatctctcaaatagtctcacaagtgcttat 34538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 696492 - 696530
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  696492 aaacagcttatgaacatgtcataagctgttttcataagt 696530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 696652 - 696690
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  696652 aaacagcttatgaacatgtcataagctgttttgataagt 696690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 10616745 - 10616695
Alignment:
Q  223 aaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||| |||||| ||||| ||||||||||||||||||| |||||| ||||||    
T  10616745 aaaataaactgaaaacagcttatgaacatgtcataaggtgttttgataagt 10616695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 31624140 - 31624178
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  31624140 aaacagcttatgaacatgtcataagctgttttcataagt 31624178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 27693453 - 27693392
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||||||||||||||||| |||||  |||| | |||| |||||||||||||| | ||||||    
T  27693453 cttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 20368194 - 20368142
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||||||||||||||||| |||||| |||||| |||  ||||||||| ||||    
T  20368194 cttatgaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 10199428 - 10199354
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    ||||||||||||||||||||||||||| |||| || ||| |||  ||||||| |||||| |||||||||||||||    
T  10199428 aaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtag 10199354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 38170722 - 38170673
Alignment:
Q  223 aaaacaaactggaaacaacttatgaacatgtcataagctgtttttataag 272  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  38170722 aaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataag 38170673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 38001646 - 38001704
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    |||||||||||||||| ||||||||||||||| |||||| |||  ||| ||||||||||    
T  38001646 aaacaacttatgaacaggtcataagctgttttcataagttctcccaaacagtctcacaa 38001704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 24460468 - 24460391
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataa 271  Q
    ||||| ||||||||| |  |||| |||| |||| || ||||||||| ||||||||||||||||||||| |||| ||||    
T  24460468 ttttcataagctatccttgagagcttacaaaaataagctggaaacagcttatgaacatgtcataagctattttcataa 24460391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 35925705 - 35925778
Alignment:
Q  200 taagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||||||||||| ||||||||   ||| ||  || ||||| |||||||||||||||||||||||||| ||||||    
T  35925705 taagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagt 35925778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 3224474 - 3224541
Alignment:
Q  236 aacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgt 303  Q
    ||||||||||| ||||||||||||  |||| ||||| | |||| ||||||| |||||| |||||||||    
T  3224474 aacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcacaagtgcttatgt 3224541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 31517760 - 31517693
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||| |||||||||||||||| || |||||| |||||| |||  ||| |||||||||| ||||||||    
T  31517760 aaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatg 31517693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 32515461 - 32515387
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    |||||||||||  |||||||||| |||||||  |||||  |||  ||| |||||||||| |||||||||||||||    
T  32515461 aaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtag 32515387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 7262538 - 7262501
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataag 272  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  7262538 aaacagcttatgaacatgtcaaaagctgtttttataag 7262501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 27140493 - 27140558
Alignment:
Q  200 taagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgttt 265  Q
    |||||||||||| |||| |||   ||| || ||| |||||||||||| ||||||||||||||||||    
T  27140493 taagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 34290229 - 34290345
Alignment:
Q  177 tataagttataagttgtttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgct 276  Q
    |||||| |||||| |||||| | ||||||||| || |||  |||  |||| || ||| |||||||||||||| |||||||||||| |||| |||| | ||    
T  34290229 tataagctataagctgtttt-cataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataagcttttttaataaattct 34290327  T
Q  277 ctgaaatagtctcacaat 294  Q
    |  ||||||| |||||||    
T  34290328 cccaaatagtttcacaat 34290345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 37811909 - 37811945
Alignment:
Q  242 ttatgaacatgtcataagctgtttttataagtgctct 278  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  37811909 ttatgaacatgtcataagctgttttcataagttctct 37811945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 45205061 - 45205152
Alignment:
Q  177 tataagttataagttgtttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttat 269  Q
    |||||| || |||||||||| | ||||||||||||||||||| |   ||| || ||| |||||||||| | |||| ||||||| |||||||||    
T  45205061 tataagctagaagttgtttt-cataagctatcatgtagagttcatggaaataagctgaaaacaacttagggacatatcataagttgtttttat 45205152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 11569518 - 11569410
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||| |||||||||||| |||| ||   |||| || ||| |||||||||||| ||||||||||||||||||  |||||  |||| ||| ||||||||||    
T  11569518 ttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaa 11569419  T
Q  294 ttgcttatg 302  Q
     || |||||    
T  11569418 gtggttatg 11569410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 16162812 - 16162884
Alignment:
Q  237 acaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    |||||||||||||| ||||||||||||||| ||||||  ||| ||| |||||||||| || ||||| ||||||    
T  16162812 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtag 16162884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 779122 - 779050
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttt 266  Q
    ||||| ||| ||||| || ||||| |||||||| ||  || ||||||||||||||||||||||||| ||||||    
T  779122 ttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagttgtttt 779050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 8629506 - 8629564
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||||||||||| ||||||||||| |||||| |||||| |||| |||  |||||||||    
T  8629506 aaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaa 8629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 2595017 - 2594985
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgttttt 267  Q
    ||||||||||||||||||||||||| |||||||    
T  2595017 aaacaacttatgaacatgtcataagttgttttt 2594985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 44014816 - 44014744
Alignment:
Q  237 acaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    |||||||||||||| ||||||||||||||| ||||||  ||| ||| |||||||||| || ||||| ||||||    
T  44014816 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtag 44014744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 24785311 - 24785378
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    |||||||||||||| ||||| |||| ||||||| ||||| ||| |||| ||| |||||| ||||||||    
T  24785311 aaacaacttatgaaaatgtcctaagatgtttttgtaagttctccgaaacagtgtcacaagtgcttatg 24785378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 1810027 - 1810101
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    |||||||| ||| |||||||||||| |||||   ||||  |||| |||||||||||||| || ||||||||||||    
T  1810027 aaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatagtctcacaagtgattatgttagtag 1810101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 2304291 - 2304217
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    ||||| ||||||||||||||||||| || ||| |||| | |||| ||||||| |||||| || ||||| ||||||    
T  2304291 aaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtag 2304217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 5391929 - 5391967
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  5391929 aaacagcttatgaacatgtcataagctgttttcataagt 5391967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 39723260 - 39723222
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  39723260 aaacagcttatgaacatgtcataagctgttttgataagt 39723222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 39723420 - 39723382
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  39723420 aaacagcttatgaacatgtcataagctgttttcataagt 39723382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 45541621 - 45541659
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  45541621 aaacagcttatgaacatgtcataagctgttttcataagt 45541659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 49465676 - 49465612
Alignment:
Q  244 atgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagta 308  Q
    |||||||||| |||||||||||| |||||| ||| |||| | | |||||| |||||||| |||||    
T  49465676 atgaacatgtaataagctgttttcataagttctccgaaacaatatcacaagtgcttatggtagta 49465612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 54837054 - 54837018
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataa 271  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  54837054 aaacaagttatgaacatgtcataagctgttttcataa 54837018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 37863974 - 37863923
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagt 286  Q
    ||||||||||||||| |||||||||||||||| |||||| |||| |||||||    
T  37863974 aaacaacttatgaacgtgtcataagctgttttcataagttctctcaaatagt 37863923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 1137755 - 1137800
Alignment:
Q  228 aaactggaaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||    
T  1137755 aaactgaaaacaacttatgaacatgtcataagatgttttcataagt 1137800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 36577552 - 36577496
Alignment:
Q  245 tgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttat 301  Q
    ||||||||||||||| ||||||| ||||| ||| |||| |||||||||| |||||||    
T  36577552 tgaacatgtcataagttgtttttgtaagttctccgaaacagtctcacaagtgcttat 36577496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 19304965 - 19305006
Alignment:
Q  224 aaacaaactggaaacaacttatgaacatgtcataagctgttt 265  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  19304965 aaacaagctgaaaacaacttatggacatgtcataagctgttt 19305006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 43827970 - 43827935
Alignment:
Q  238 caacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||||||||||||||||||||||||||||||||||    
T  43827970 caacttatgaacatgtcataagctgtttttataagt 43827935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 1056183 - 1056118
Alignment:
Q  201 aagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttt 266  Q
    ||||| |||||||||| |||  ||||||| ||| |||||||| |||||||||||||||| ||||||    
T  1056183 aagctctcatgtagagcttatgaaaacaagctgaaaacaactaatgaacatgtcataagttgtttt 1056118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 1625893 - 1626009
Alignment:
Q  177 tataagttataagttgtttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaaca-tgtcataagctgtttttataagtgc 275  Q
    |||||||||||||||| ||||| ||||||||| || |||  |||| ||||  | ||| ||||| |||||||||| |||||||||||  ||| |||||| |    
T  1625893 tataagttataagttg-ttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtcataagctactttcataagttc 1625991  T
Q  276 tctgaaatagtctcacaa 293  Q
    ||| ||||||||| ||||    
T  1625992 tctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 8017484 - 8017552
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgt 303  Q
    |||||| |||||||||| |||||||||||||| |||||| |||  ||||| || ||||| |||||||||    
T  8017484 aaacaaattatgaacatatcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgt 8017552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 787382 - 787449
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||| |||||| ||||||||||||||||||| |||||| |||  ||| ||| |||||| ||||||||    
T  787382 aaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatg 787449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 4350747 - 4350814
Alignment:
Q  242 ttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagtag 309  Q
    ||||||||||||||||||||||||| |||||| |||| ||| | ||||  || ||||||||| |||||    
T  4350747 ttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtag 4350814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 5902581 - 5902502
Alignment:
Q  223 aaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||||| ||| |||||  ||||||||||||||||||||||||| |||||| ||   ||| |||||||||| || |||||    
T  5902581 aaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 32614968 - 32614925
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctct 278  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||    
T  32614968 aaacaacatatgaacatgtcataagttgtttttataagttctct 32614925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 41293167 - 41293124
Alignment:
Q  250 atgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    |||||||||||||||||||||||| |||  ||||||||||||||    
T  41293167 atgtcataagctgtttttataagttctcccaaatagtctcacaa 41293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 19977997 - 19978063
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttat 301  Q
    ||||||||||||||| ||| ||||| ||||| ||||||| |||| ||| |||||| ||| |||||||    
T  19977997 aaacaacttatgaacgtgttataagttgtttctataagttctctcaaacagtctcgcaagtgcttat 19978063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 28677679 - 28677641
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  28677679 aaacaacttatgaaaatgtcataagctgttttcataagt 28677641  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 35379077 - 35378999
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataag 272  Q
    ||||| ||||||||| || |||| |||  |||| || ||| |||||||||||||||| ||||| ||||||||| |||||    
T  35379077 ttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataag 35378999  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 40158768 - 40158806
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  40158768 aaacaacttataaacatgtcataagctgttttcataagt 40158806  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 1801724 - 1801785
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    |||||||||||||||||||||||||| |||||| |||  ||| | | |||||| ||||||||    
T  1801724 cttatgaacatgtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatg 1801785  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 12313190 - 12313121
Alignment:
Q  238 caacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgttagt 307  Q
    ||||||||||||||| ||||||||||||| |||| | |||  ||| | |||||||| |||||||| ||||    
T  12313190 caacttatgaacatggcataagctgttttcataaattctcccaaacaatctcacaagtgcttatgctagt 12313121  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 24347778 - 24347839
Alignment:
Q  241 cttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||||||| | ||||||| || ||| |||||| ||||||||||||||||||| | ||||||    
T  24347778 cttatgaacctatcataagttgctttcataagttctctgaaatagtctcacaagtacttatg 24347839  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 29316791 - 29316763
Alignment:
Q  239 aacttatgaacatgtcataagctgttttt 267  Q
    |||||||||||||||||||||||||||||    
T  29316791 aacttatgaacatgtcataagctgttttt 29316763  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 39248149 - 39248207
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||| |||||||||| |||||||||||||||||||||| |||  ||| ||||||||||    
T  39248149 aaacagcttatgaacaagtcataagctgtttttataagttctcccaaacagtctcacaa 39248207  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 2568651 - 2568746
Alignment:
Q  177 tataagttataagttgtttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagt 273  Q
    |||||| ||||||||||||| | |||||||||||| |||| | |  |||| || ||  ||| |||||||||| ||||||||||||||||| ||||||    
T  2568651 tataagctataagttgtttt-cataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagt 2568746  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 10272508 - 10272383
Alignment:
Q  177 tataagttataagttgtttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgct 276  Q
    |||||| ||||||||||||| | ||||| ||| || ||||||||  |||| || ||| ||||||||||   |||||||||||| ||||| ||||||  ||    
T  10272508 tataagctataagttgtttt-cataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataagcact 10272410  T
Q  277 ctgaaatagtctcacaattgcttatgt 303  Q
    |  |||||||| ||||| || ||||||    
T  10272409 cccaaatagtcacacaagtgattatgt 10272383  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 10152382 - 10152451
Alignment:
Q  233 ggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatg 302  Q
    ||||| |||||||| |||||||||||| |||||| |||||  |||  |||||||||||||  ||||||||    
T  10152382 ggaaaaaacttatggacatgtcataagttgttttcataagctctccaaaatagtctcacatgtgcttatg 10152451  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 11707064 - 11707153
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaat 283  Q
    ||||| ||||||||| ||||||| ||   |||| || ||| ||||||||||| |||||||||||| || |||| |||||| |||| ||||    
T  11707064 ttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataatctattttgataagttctctcaaat 11707153  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 17258944 - 17258831
Alignment:
Q  194 ttttcctaagctatcatgtagagtttaccaaaacaaactggaaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaa 293  Q
    ||||| ||| ||||| || |||| |||  |||| || ||| ||||| ||||||||||||||||||||| |||| ||| || |||  ||| | | ||||||    
T  17258944 ttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcacaa 17258845  T
Q  294 ttgcttatgttagt 307  Q
     |||||||||||||    
T  17258844 gtgcttatgttagt 17258831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 12460021 - 12459953
Alignment:
Q  235 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgcttatgt 303  Q
    ||||||| ||||||||||||||||| |||||| ||| || |||  ||| |||||||||  |||||||||    
T  12460021 aaacaacatatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgt 12459953  T

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