View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13903_low_11 (Length: 312)
Name: NF13903_low_11
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13903_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 31 - 295
Target Start/End: Original strand, 55312683 - 55312955
Alignment:
| Q |
31 |
ttaaaaaatttcatgcaaaatttgagaaaacgactaaatt--------gttcaatttaatggactaaatttctatctcacaaaattgagagggttaaata |
122 |
Q |
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| T |
55312683 |
ttaataaatttcatgcaaaatttgagaaaacaactaaattgattaattgttcaatttaatggactaaatttctatctcacaaaattgagagggttaaata |
55312782 |
T |
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| Q |
123 |
gattgagtgttacaatttcaagcatagtcgatcgaagtgatcaaacaaggaactagggacatgtttggtgtgcataatatgattgaaatatgacatgata |
222 |
Q |
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| T |
55312783 |
gattgagtgttacaatttcaagcatagtcgatcgaagtgatcaaacaaggaactagggacatgtttggtgtgcataatatgattgaaatatgacatgata |
55312882 |
T |
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| Q |
223 |
aaaagtttgataagaataagatatgccaatggaatgataaaaaagatgatagtggaaggataaataaggaatt |
295 |
Q |
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| T |
55312883 |
aaaagtttgataagaataagatatgccaatggaatgataaaaaagatgatagtggaaggataaataaggaatt |
55312955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55307590 - 55307630
Alignment:
| Q |
1 |
tcttttactgcatttaaacaagcactgattttaaaaaattt |
41 |
Q |
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| T |
55307590 |
tcttttactgcatttaaacaagcactgattttaaaaaattt |
55307630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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