View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13903_low_5 (Length: 646)
Name: NF13903_low_5
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13903_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 187 - 569
Target Start/End: Complemental strand, 26159156 - 26158773
Alignment:
| Q |
187 |
atccaaggctttctttctttactggtaggggaaattaaacacttgccaacaagggtagcttcaaataagagagacttaaag-ataaaagtatcctttcca |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
26159156 |
atccaaggctttctttctttaatggtaggggaaattaaacacttgccaacaagggtagcttcaaacaagagagacttaaaggataaaagtatcctttcca |
26159057 |
T |
|
| Q |
286 |
caaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaacttatgagaaaattgtcatgtcatgtttgactcgagtat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26159056 |
caaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaactaatgagaaaattgtcatgtcatgtttgactcgagtat |
26158957 |
T |
|
| Q |
386 |
ctgataaatgttagacatatttaaagtgtttgtacggaaaaaacataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattct |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26158956 |
ctgataaatgttagacatatttaaagtgtttgtacagaaaaaacataggagcaatgttgtcaggtatggattgcagtaaataaaaatctgttcaaattct |
26158857 |
T |
|
| Q |
486 |
tctatacgctacagtattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaaattgcgctaagttgtag |
569 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158856 |
tctatacgctacaatattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaaattgcgctaagttgtag |
26158773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 187 - 569
Target Start/End: Complemental strand, 26172454 - 26172071
Alignment:
| Q |
187 |
atccaaggctttctttctttactggtaggggaaattaaacacttgccaacaagggtagcttcaaataagagagacttaaag-ataaaagtatcctttcca |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
26172454 |
atccaaggctttctttctttaatggtaggggaaattaaacacttgccaacaagggtagcttcaaacaagagagacttaaaggataaaagtatcctttcca |
26172355 |
T |
|
| Q |
286 |
caaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaacttatgagaaaattgtcatgtcatgtttgactcgagtat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26172354 |
caaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaactaatgagaaaattgtcatgtcatgtttgactcgagtat |
26172255 |
T |
|
| Q |
386 |
ctgataaatgttagacatatttaaagtgtttgtacggaaaaaacataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattct |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26172254 |
ctgataaatgttagacatatttaaagtgtttgtacagaaaaaacataggagcaatgttgtcaggtatggattgcagtaaataaaaatctgttcaaattct |
26172155 |
T |
|
| Q |
486 |
tctatacgctacagtattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaaattgcgctaagttgtag |
569 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26172154 |
tctatacgctacaatattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaaattgcgctaagttgtag |
26172071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 355 - 642
Target Start/End: Complemental strand, 26154035 - 26153749
Alignment:
| Q |
355 |
aaaattgtcatgtcatgtttgactcgagtatctgataaatgtta--gacatatttaaagtgtttgtacggaaaaaacataggagcaatgttgtcaggtat |
452 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
26154035 |
aaaaatgtcatgtcatgtttgacttgagtatctgatgaatgttaaagacatatttgaagtgtttgtacagaaaaaacataggaacaatgttgtcaggtat |
26153936 |
T |
|
| Q |
453 |
ggattgcagtaaataacaatctgttcaaattcttctatacgctacagtattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaa |
552 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26153935 |
ggattgtagtaaataacaatctgttcaaatccttttatacgctacaatattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaa |
26153836 |
T |
|
| Q |
553 |
attgcgctaagttgtaggcctgtagca-cgctataggctcctatttgataacattacatatggatgatagaacatttcaaattaatcatat |
642 |
Q |
| |
|
||| ||||||||||||||| || |||| || |||| |||||||||||| |||||| |||||||| | ||||||||||||||||||||| |
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|
| T |
26153835 |
attacgctaagttgtaggcttgcagcaccgttata-gctcctatttgacaacattgcatatggagg---taacatttcaaattaatcatat |
26153749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 355 - 642
Target Start/End: Complemental strand, 26167333 - 26167047
Alignment:
| Q |
355 |
aaaattgtcatgtcatgtttgactcgagtatctgataaatgtta--gacatatttaaagtgtttgtacggaaaaaacataggagcaatgttgtcaggtat |
452 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
26167333 |
aaaaatgtcatgtcatgtttgacttgagtatctgatgaatgttaaagacatatttgaagtgtttgtacagaaaaaacataggaacaatgttgtcaggtat |
26167234 |
T |
|
| Q |
453 |
ggattgcagtaaataacaatctgttcaaattcttctatacgctacagtattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaa |
552 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26167233 |
ggattgtagtaaataacaatctgttcaaatccttttatacgctacaatattatagtgccgctataactgctatttcacatcacaatagtgatttgttcaa |
26167134 |
T |
|
| Q |
553 |
attgcgctaagttgtaggcctgtagca-cgctataggctcctatttgataacattacatatggatgatagaacatttcaaattaatcatat |
642 |
Q |
| |
|
||| ||||||||||||||| || |||| || |||| |||||||||||| |||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
26167133 |
attacgctaagttgtaggcttgcagcaccgttata-gctcctatttgacaacattgcatatggagg---taacatttcaaattaatcatat |
26167047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 70 - 348
Target Start/End: Complemental strand, 26154349 - 26154071
Alignment:
| Q |
70 |
tggtttgaaatagcttttaagttgagcaccaacttcaatccagaaaaaagagaaattaatatt-----ggcctgaactcctctgaaacatgaatgttaaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || | ||||||| ||| |||||||||||| |||| |
|
|
| T |
26154349 |
tggtttgaaatagcttttaagttgagcaccaactacaatccagaaaag-gagaaattaatcttatcttgacctgaacagctcagaaacatgaatgataaa |
26154251 |
T |
|
| Q |
165 |
ttcccacaagaaatgggtagttatccaaggctttctttctttactggtaggggaaattaaacacttgccaacaagggtagcttcaaataagagagactta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26154250 |
ttcccacaagaaatgggtagttatccaatgctttctttggt----ggtaggggaatttaaacacttgctagcaagggtagcttcaaataagagagactta |
26154155 |
T |
|
| Q |
265 |
aagataaaagtatcctttccacaaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaact |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
26154154 |
aagataaaagtatcctttccacaaatatcaatacctaaagcataatgcacccttcataattcacactttcaggaaagttcaact |
26154071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 70 - 348
Target Start/End: Complemental strand, 26167647 - 26167369
Alignment:
| Q |
70 |
tggtttgaaatagcttttaagttgagcaccaacttcaatccagaaaaaagagaaattaatatt-----ggcctgaactcctctgaaacatgaatgttaaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || | ||||||| ||| |||||||||||| |||| |
|
|
| T |
26167647 |
tggtttgaaatagcttttaagttgagcaccaactacaatccagaaaag-gagaaattaatcttatcttgacctgaacagctcagaaacatgaatgataaa |
26167549 |
T |
|
| Q |
165 |
ttcccacaagaaatgggtagttatccaaggctttctttctttactggtaggggaaattaaacacttgccaacaagggtagcttcaaataagagagactta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26167548 |
ttcccacaagaaatgggtagttatccaatgctttctttggt----ggtaggggaatttaaacacttgctagcaagggtagcttcaaataagagagactta |
26167453 |
T |
|
| Q |
265 |
aagataaaagtatcctttccacaaatatcaatacctaaagcataatgcaccaatcataattcacactttcaggaatgttcaact |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
26167452 |
aagataaaagtatcctttccacaaatatcaatacctaaagcataatgcacccttcataattcacactttcaggaaagttcaact |
26167369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26159263 - 26159161
Alignment:
| Q |
1 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgataagtggtttgaaatagcttttaagttgagcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26159263 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgacaagtggtttgaaatagcttttaagttgagcacca |
26159164 |
T |
|
| Q |
101 |
act |
103 |
Q |
| |
|
||| |
|
|
| T |
26159163 |
act |
26159161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26172561 - 26172459
Alignment:
| Q |
1 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgataagtggtttgaaatagcttttaagttgagcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26172561 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgacaagtggtttgaaatagcttttaagttgagcacca |
26172462 |
T |
|
| Q |
101 |
act |
103 |
Q |
| |
|
||| |
|
|
| T |
26172461 |
act |
26172459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26154441 - 26154370
Alignment:
| Q |
1 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgataagtgg |
72 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26154441 |
acttgcagtctaggtcaaaatttgaagtaataataatttcttgttttcaagtgagaattctttgacaagtgg |
26154370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26167739 - 26167668
Alignment:
| Q |
1 |
acttgcagtctaggtaaaaatttgaagtgataataatttcttgttttcaagtgagaattctttgataagtgg |
72 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26167739 |
acttgcagtctaggtcaaaatttgaagtaataataatttcttgttttcaagtgagaattctttgacaagtgg |
26167668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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