View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13903_low_9 (Length: 414)

Name: NF13903_low_9
Description: NF13903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13903_low_9
NF13903_low_9
[»] scaffold0234 (4 HSPs)
scaffold0234 (173-380)||(2321-2528)
scaffold0234 (173-380)||(11212-11419)
scaffold0234 (80-137)||(2564-2621)
scaffold0234 (80-137)||(11455-11512)
[»] chr4 (50 HSPs)
chr4 (173-380)||(19926760-19926967)
chr4 (173-380)||(26970463-26970670)
chr4 (173-380)||(55612683-55612890)
chr4 (173-380)||(5707320-5707527)
chr4 (173-380)||(26963640-26963847)
chr4 (173-380)||(5713948-5714155)
chr4 (173-380)||(10621333-10621540)
chr4 (173-380)||(868597-868804)
chr4 (173-380)||(10628412-10628619)
chr4 (175-380)||(18262214-18262419)
chr4 (175-380)||(28393134-28393339)
chr4 (175-380)||(4426604-4426808)
chr4 (193-380)||(18269093-18269280)
chr4 (185-380)||(8845215-8845410)
chr4 (185-380)||(8858179-8858374)
chr4 (173-288)||(12357136-12357251)
chr4 (182-380)||(20311300-20311499)
chr4 (185-380)||(10677555-10677747)
chr4 (185-380)||(10891195-10891387)
chr4 (182-380)||(5668125-5668324)
chr4 (175-379)||(5616215-5616421)
chr4 (182-380)||(35223579-35223767)
chr4 (80-137)||(5713855-5713912)
chr4 (80-137)||(26963547-26963604)
chr4 (80-137)||(26970370-26970427)
chr4 (81-137)||(19927003-19927059)
chr4 (80-137)||(10621576-10621633)
chr4 (81-137)||(5707228-5707284)
chr4 (81-137)||(12357044-12357100)
chr4 (83-137)||(868507-868561)
chr4 (81-137)||(10628655-10628711)
chr4 (81-137)||(17142372-17142428)
chr4 (81-137)||(55612594-55612650)
chr4 (81-135)||(28393380-28393434)
chr4 (80-137)||(18268975-18269032)
chr4 (81-137)||(4426847-4426903)
chr4 (199-380)||(21454137-21454319)
chr4 (19-61)||(22339622-22339664)
chr4 (222-289)||(39074278-39074346)
chr4 (88-137)||(55992680-55992729)
chr4 (211-372)||(56516094-56516255)
chr4 (96-137)||(5668371-5668412)
chr4 (89-137)||(8845118-8845166)
chr4 (89-137)||(8858082-8858130)
chr4 (97-137)||(18262136-18262176)
chr4 (310-362)||(39074218-39074270)
chr4 (223-282)||(11161913-11161972)
chr4 (83-137)||(20311207-20311261)
chr4 (211-379)||(30040750-30040919)
chr4 (89-137)||(24699958-24700006)
[»] chr1 (26 HSPs)
chr1 (173-380)||(18252030-18252237)
chr1 (173-380)||(18532514-18532721)
chr1 (173-380)||(27131409-27131616)
chr1 (175-380)||(21171233-21171438)
chr1 (175-380)||(27310577-27310782)
chr1 (175-380)||(16359035-16359240)
chr1 (182-380)||(36816633-36816831)
chr1 (173-380)||(3855919-3856126)
chr1 (173-380)||(22657221-22657429)
chr1 (182-380)||(27277557-27277753)
chr1 (207-380)||(12006539-12006712)
chr1 (207-380)||(12014284-12014457)
chr1 (81-137)||(18251936-18251992)
chr1 (81-137)||(18532757-18532813)
chr1 (185-380)||(9917918-9918106)
chr1 (81-137)||(27310821-27310877)
chr1 (81-137)||(16359280-16359336)
chr1 (80-137)||(21171479-21171536)
chr1 (80-134)||(36816881-36816935)
chr1 (80-137)||(3856164-3856221)
chr1 (80-133)||(22657469-22657522)
chr1 (81-137)||(27131652-27131704)
chr1 (185-248)||(30720625-30720688)
chr1 (203-280)||(3403248-3403325)
chr1 (203-280)||(3443494-3443571)
chr1 (81-137)||(27277800-27277856)
[»] chr7 (27 HSPs)
chr7 (173-380)||(29327784-29327991)
chr7 (173-380)||(11536062-11536269)
chr7 (173-380)||(11542980-11543187)
chr7 (175-380)||(15152445-15152650)
chr7 (175-380)||(15148144-15148349)
chr7 (175-380)||(18561009-18561214)
chr7 (175-380)||(12750828-12751033)
chr7 (182-376)||(12738545-12738739)
chr7 (175-380)||(18257842-18258047)
chr7 (182-361)||(13392160-13392338)
chr7 (195-380)||(2364917-2365101)
chr7 (80-137)||(11543223-11543280)
chr7 (81-137)||(2653275-2653331)
chr7 (206-365)||(7396221-7396381)
chr7 (81-137)||(12738443-12738499)
chr7 (80-137)||(11536305-11536362)
chr7 (80-137)||(12750732-12750789)
chr7 (80-137)||(15152349-15152406)
chr7 (182-363)||(39111822-39112002)
chr7 (80-136)||(29327689-29327745)
chr7 (81-137)||(15148049-15148105)
chr7 (80-136)||(13392029-13392085)
chr7 (247-290)||(3132748-3132791)
chr7 (223-288)||(10234179-10234244)
chr7 (81-137)||(18258087-18258143)
chr7 (81-137)||(18560913-18560969)
chr7 (173-205)||(2653207-2653239)
[»] chr3 (53 HSPs)
chr3 (173-380)||(6110064-6110271)
chr3 (173-380)||(10572592-10572799)
chr3 (182-380)||(17781118-17781316)
chr3 (175-380)||(16482483-16482688)
chr3 (173-380)||(15600884-15601091)
chr3 (173-380)||(15607429-15607636)
chr3 (175-380)||(18522665-18522870)
chr3 (176-380)||(13211305-13211509)
chr3 (173-380)||(13248607-13248814)
chr3 (173-380)||(15357586-15357793)
chr3 (182-380)||(10579355-10579553)
chr3 (175-380)||(18519980-18520182)
chr3 (182-380)||(19089745-19089943)
chr3 (173-380)||(8490488-8490702)
chr3 (192-380)||(15342219-15342407)
chr3 (175-380)||(17200184-17200389)
chr3 (175-380)||(13516813-13517018)
chr3 (182-380)||(32056900-32057098)
chr3 (173-334)||(18640792-18640953)
chr3 (182-380)||(1647521-1647723)
chr3 (193-361)||(16200145-16200313)
chr3 (173-365)||(29924971-29925163)
chr3 (173-365)||(29974124-29974316)
chr3 (193-361)||(16200451-16200619)
chr3 (182-380)||(24253388-24253587)
chr3 (279-380)||(17136465-17136566)
chr3 (80-137)||(6109971-6110028)
chr3 (80-137)||(13248514-13248571)
chr3 (81-137)||(8490396-8490452)
chr3 (79-137)||(13211209-13211267)
chr3 (175-237)||(18534758-18534820)
chr3 (81-137)||(18640989-18641045)
chr3 (81-137)||(17136137-17136193)
chr3 (81-131)||(10579603-10579653)
chr3 (80-137)||(15607672-15607730)
chr3 (80-137)||(15351237-15351294)
chr3 (80-137)||(15357829-15357886)
chr3 (80-137)||(17200427-17200484)
chr3 (81-137)||(16482727-16482782)
chr3 (81-137)||(18519885-18519941)
chr3 (80-131)||(10572840-10572891)
chr3 (79-137)||(13516717-13516775)
chr3 (80-137)||(15601127-15601185)
chr3 (80-137)||(17781358-17781415)
chr3 (175-220)||(18510924-18510969)
chr3 (80-137)||(19089985-19090042)
chr3 (81-137)||(1647768-1647824)
chr3 (81-137)||(32057144-32057200)
chr3 (80-137)||(18510828-18510885)
chr3 (80-137)||(18522569-18522626)
chr3 (80-137)||(18534662-18534719)
chr3 (81-137)||(29924879-29924935)
chr3 (81-137)||(29974032-29974088)
[»] scaffold0390 (4 HSPs)
scaffold0390 (173-380)||(6934-7141)
scaffold0390 (173-380)||(13950-14157)
scaffold0390 (80-137)||(7177-7234)
scaffold0390 (81-137)||(14193-14249)
[»] chr8 (19 HSPs)
chr8 (173-380)||(21940665-21940872)
chr8 (175-380)||(22171491-22171694)
chr8 (182-380)||(6094132-6094330)
chr8 (175-374)||(28554885-28555084)
chr8 (182-380)||(24642658-24642856)
chr8 (182-306)||(24636863-24636987)
chr8 (81-137)||(21940573-21940629)
chr8 (81-137)||(22070108-22070164)
chr8 (185-377)||(38232380-38232570)
chr8 (80-137)||(22171395-22171452)
chr8 (80-133)||(24642555-24642608)
chr8 (81-137)||(6094031-6094087)
chr8 (203-364)||(32872857-32873019)
chr8 (80-137)||(28554790-28554847)
chr8 (194-377)||(2375027-2375208)
chr8 (211-274)||(10920234-10920297)
chr8 (269-380)||(14983920-14984030)
chr8 (80-134)||(2374946-2375000)
chr8 (81-118)||(24636605-24636642)
[»] chr6 (30 HSPs)
chr6 (173-380)||(29308890-29309097)
chr6 (173-380)||(29315850-29316057)
chr6 (175-380)||(16566320-16566525)
chr6 (173-380)||(27381252-27381459)
chr6 (173-380)||(27471635-27471842)
chr6 (175-380)||(17684469-17684674)
chr6 (173-380)||(17691440-17691647)
chr6 (175-380)||(188977-189182)
chr6 (175-380)||(25537159-25537364)
chr6 (175-380)||(11651725-11651930)
chr6 (175-380)||(13359269-13359474)
chr6 (212-380)||(20553587-20553755)
chr6 (83-137)||(17691683-17691737)
chr6 (80-137)||(27381495-27381552)
chr6 (80-137)||(27471878-27471935)
chr6 (80-137)||(29308797-29308854)
chr6 (80-137)||(29315757-29315814)
chr6 (196-380)||(27925772-27925961)
chr6 (192-365)||(8509941-8510115)
chr6 (80-137)||(17684712-17684769)
chr6 (211-380)||(17850495-17850663)
chr6 (81-135)||(11651630-11651684)
chr6 (80-137)||(25537405-25537462)
chr6 (211-379)||(20736604-20736773)
chr6 (80-137)||(13359512-13359569)
chr6 (182-235)||(31258065-31258118)
chr6 (89-137)||(16566563-16566611)
chr6 (81-137)||(189221-189280)
chr6 (95-137)||(16394484-16394526)
chr6 (189-254)||(22259925-22259990)
[»] chr2 (15 HSPs)
chr2 (173-380)||(21330248-21330455)
chr2 (192-380)||(18796525-18796713)
chr2 (182-380)||(18619814-18620011)
chr2 (182-318)||(19692598-19692734)
chr2 (238-365)||(20977957-20978084)
chr2 (207-380)||(36270199-36270373)
chr2 (81-137)||(21330493-21330549)
chr2 (207-380)||(18822115-18822290)
chr2 (80-137)||(19692773-19692830)
chr2 (209-364)||(36802664-36802820)
chr2 (293-380)||(12098618-12098705)
chr2 (293-380)||(18852059-18852146)
chr2 (215-365)||(24471643-24471792)
chr2 (311-380)||(22183483-22183552)
chr2 (80-137)||(18796411-18796470)
[»] scaffold0220 (2 HSPs)
scaffold0220 (173-380)||(18288-18495)
scaffold0220 (81-137)||(18196-18252)
[»] scaffold0433 (2 HSPs)
scaffold0433 (173-380)||(7107-7314)
scaffold0433 (80-137)||(7014-7071)
[»] chr5 (20 HSPs)
chr5 (173-380)||(24695466-24695673)
chr5 (173-380)||(18569863-18570070)
chr5 (175-380)||(19714498-19714703)
chr5 (182-380)||(19707218-19707416)
chr5 (182-361)||(27347497-27347675)
chr5 (185-380)||(22547016-22547211)
chr5 (173-282)||(39537962-39538071)
chr5 (185-358)||(17285754-17285927)
chr5 (239-380)||(18807034-18807175)
chr5 (80-137)||(24695709-24695766)
chr5 (286-378)||(39538701-39538793)
chr5 (185-358)||(17298907-17299080)
chr5 (81-137)||(19714742-19714798)
chr5 (182-282)||(31886540-31886640)
chr5 (80-137)||(19707462-19707519)
chr5 (81-137)||(27347722-27347778)
chr5 (199-289)||(33477389-33477479)
chr5 (80-137)||(18570108-18570165)
chr5 (81-136)||(39537870-39537925)
chr5 (223-291)||(11479420-11479489)
[»] scaffold0657 (2 HSPs)
scaffold0657 (173-380)||(993-1200)
scaffold0657 (81-137)||(901-957)
[»] scaffold0186 (2 HSPs)
scaffold0186 (173-380)||(25990-26197)
scaffold0186 (80-136)||(26231-26287)
[»] scaffold0063 (2 HSPs)
scaffold0063 (175-380)||(5531-5736)
scaffold0063 (80-137)||(5435-5492)
[»] scaffold0008 (2 HSPs)
scaffold0008 (175-356)||(230365-230545)
scaffold0008 (81-137)||(230584-230640)
[»] scaffold0203 (1 HSPs)
scaffold0203 (80-137)||(23769-23826)
[»] scaffold0176 (2 HSPs)
scaffold0176 (173-237)||(8446-8510)
scaffold0176 (80-137)||(8546-8603)
[»] scaffold0326 (1 HSPs)
scaffold0326 (80-137)||(16522-16579)
[»] scaffold0705 (1 HSPs)
scaffold0705 (80-137)||(41-98)
[»] scaffold0637 (1 HSPs)
scaffold0637 (81-137)||(8944-9000)
[»] scaffold0565 (2 HSPs)
scaffold0565 (83-137)||(10202-10256)
scaffold0565 (192-223)||(10127-10158)
[»] scaffold0767 (1 HSPs)
scaffold0767 (81-117)||(1-37)
[»] scaffold0170 (1 HSPs)
scaffold0170 (80-133)||(5877-5930)
[»] scaffold0032 (1 HSPs)
scaffold0032 (202-274)||(92194-92267)


Alignment Details
Target: scaffold0234 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 2528 - 2321
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2528 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 2429  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 2329  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  2328 ctgatgat 2321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 11419 - 11212
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 11320  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11319 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11220  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  11219 ctgatgat 11212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 2621 - 2564
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 11512 - 11455
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11512 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 19926967 - 19926760
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926967 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 19926868  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926867 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 19926768  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  19926767 ctgatgat 19926760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 26970463 - 26970670
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970463 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 26970562  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970563 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26970662  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  26970663 ctgatgat 26970670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 55612683 - 55612890
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55612683 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 55612782  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55612783 accccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 55612882  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  55612883 ctgatgat 55612890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 5707320 - 5707527
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5707320 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 5707419  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5707420 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5707519  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  5707520 ctgatgat 5707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 26963640 - 26963847
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26963640 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgag 26963739  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26963740 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26963839  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  26963840 ctgatgat 26963847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 5713948 - 5714155
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  5713948 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgag 5714047  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5714048 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5714147  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  5714148 ctgatgat 5714155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 10621540 - 10621333
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10621540 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10621441  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10621440 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10621341  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  10621340 ctgatgat 10621333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 868597 - 868804
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  868597 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 868696  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  868697 accccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 868796  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  868797 ctgatgat 868804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 10628619 - 10628412
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10628619 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10628520  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10628519 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatattattaaagcatagagactattatgtaggtaga 10628420  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  10628419 ctgatgat 10628412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 18262214 - 18262419
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18262214 aaggcatttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18262313  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18262314 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagact 18262413  T
Q  375 gatgat 380  Q
    ||||||    
T  18262414 gatgat 18262419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 28393339 - 28393134
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28393339 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28393240  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28393239 cccattaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagact 28393140  T
Q  375 gatgat 380  Q
    ||||||    
T  28393139 gatgat 28393134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 4426808 - 4426604
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4426808 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 4426709  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4426708 cccgttaaacataagg-aactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagact 4426610  T
Q  375 gatgat 380  Q
    ||||||    
T  4426609 gatgat 4426604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 193 - 380
Target Start/End: Original strand, 18269093 - 18269280
Alignment:
Q  193 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18269093 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacataaggaa 18269192  T
Q  293 actattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18269193 actattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 18269280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 185 - 380
Target Start/End: Original strand, 8845215 - 8845410
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  8845315 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtaggctgatgat 8845410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 185 - 380
Target Start/End: Original strand, 8858179 - 8858374
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  8858279 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtaggctgatgat 8858374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 12357136 - 12357251
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12357136 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 12357235  T
Q  273 accccattaaacataa 288  Q
    ||||||||||||||||    
T  12357236 accccattaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 20311300 - 20311499
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaag-tataacttaattgtgagaccccatt 280  Q
    |||||||||||||||||||||||| ||||||||||||| | || |||||||| |  ||| |||||| ||||||| |||||||||||||||||||||||||    
T  20311300 ttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccatt 20311399  T
Q  281 aaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||||| ||| || | |||||||  || |||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||    
T  20311400 aaacataaggacactgtttttaaagtatttgttgtcaagctttattgtgaagtgagatatcattaaagcatagagactattttgtgggtagattgatgat 20311499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 10677747 - 10677555
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    |||||||||||| ||||||||||| | ||||||| ||||| |||| |||||| || ||||||| |||||||||| ||||||| | |||| ||||||||||    
T  10677747 tttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-cccattaaac 10677649  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
      || || | |||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| |||||||||||| ||||||||||||||    
T  10677648 gaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagactgatgat 10677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 10891387 - 10891195
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    |||||||||||| ||||||||||| | ||||||| ||||| |||| |||||| || ||||||| |||||||||| ||||||| | |||| ||||||||||    
T  10891387 tttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-cccattaaac 10891289  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
      || || | |||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| |||||||||||| ||||||||||||||    
T  10891288 gaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagactgatgat 10891195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 5668324 - 5668125
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||| |||||||| | | ||||| |||||| |||||||    
T  5668324 ttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgaga-cccatta 5668226  T
Q  282 aacataaggaaactattctcaaag--tatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatga 379  Q
    ||   ||||| | |||||| ||||  |||  ||||||||||||||||| |||  | |||| ||||||| ||||||||||||||||| | ||||| |||||    
T  5668225 aatgaaaggacattattcttaaagtatatttgtagtcaagctttattgtgaaaagagataacattaaatcatagagactattatgtggatagaccgatga 5668126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 379
Target Start/End: Original strand, 5616215 - 5616421
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||  |||  ||||||||||||| | ||| |||  |||||     
T  5616215 aaggcatttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagat 5616314  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaa--gctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||| ||||||   |||| | |||||| ||||||||||| |||||  | ||||||  ||| |||||||| | |||||||| |||||||||||||| |||||    
T  5616315 cccgttaaactagaggacattattcttaaagtatccgttgtcaaaggttttattatgaattgggatattaataaagcattgagactattatgtatgtaga 5616414  T
Q  373 ctgatga 379  Q
     ||||||    
T  5616415 ttgatga 5616421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 35223579 - 35223767
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||| | |||||||          | | |    
T  35223579 ttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaagtgtgacttaat----------cgtaa 35223668  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||  ||||| | |||||| ||||||| ||||||||||||||||||  ||   ||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  35223669 aacgaaaggacattattcttaaagtattcgtagtcaagctttattgtaaaaaaggataacattaaagcatatagactattatgtgggtagacggatgat 35223767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 5713855 - 5713912
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5713855 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 5713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 26963547 - 26963604
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26963547 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26963604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 26970370 - 26970427
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970370 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 26970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 19927059 - 19927003
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927059 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 19927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 10621633 - 10621576
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10621633 ttgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 10621576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 5707228 - 5707284
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5707228 tgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 5707284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 12357044 - 12357100
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12357044 tgttggaataagccctaatagccaatctatattgattggatttggctttgtatcatg 12357100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 868507 - 868561
Alignment:
Q  83 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  868507 ttggaataaaccctaatagccaatctatattgattgggtttggctttgtatcatg 868561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 10628711 - 10628655
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10628711 tgttggaataagccctaatagccaatctatattgattggttttgactttgtatcatg 10628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 17142428 - 17142372
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17142428 tgttggaaaaagccctaatagccaatctatattgattgggtttgactttgtatcatg 17142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 55612594 - 55612650
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55612594 tgttagaataagccctaataaccaatctatattgattgggtttggctttgtatcatg 55612650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 28393434 - 28393380
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatca 135  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  28393434 tgttggagtaagccctaatagccaatctatattgattgggtttgactttgtatca 28393380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18268975 - 18269032
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  18268975 ttgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 18269032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 4426903 - 4426847
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  4426903 tgttggagtaagtcctaatagccaatctatattgattgggtttggctctgtatcatg 4426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 380
Target Start/End: Complemental strand, 21454319 - 21454137
Alignment:
Q  199 tttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacatt-aagtataacttaattgtgagaccccattaaacataaggaaactat 297  Q
    ||||||||||| ||||||||| | |||||||||||||  | ||||||||||||| || | | |||||||  ||||||||||||||  |||| || | |||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaaatgtgacttaatattgagaccccattaattataatgacattat 21454220  T
Q  298 tctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    | | ||| ||||  ||||||| |||||||| ||| || |||| || ||| ||||| ||| ||||||||  ||||| |||||||    
T  21454219 ttttaaaatatctatagtcaaactttattgtgaaatgagataacaataatgcataaagattattatgtgagtagattgatgat 21454137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 22339622 - 22339664
Alignment:
Q  19 aatacatcttaagtgttatcaccattttgatgcaagttcatac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22339622 aatacatcttaagtgttatcaccattttgatgcaagttcatac 22339664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 39074346 - 39074278
Alignment:
Q  222 ctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataag 289  Q
    |||||||| ||||||||||||| | ||||||||||||| |||||||  |||||||||||||||||||||    
T  39074346 ctagaataattagtccgtttaaattgaacattaagtatgacttaatcatgagaccccattaaacataag 39074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 55992680 - 55992729
Alignment:
Q  88 ataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  55992680 ataagccctaatagccaatttgtattgattgggtttgactttgtatcatg 55992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 372
Target Start/End: Original strand, 56516094 - 56516255
Alignment:
Q  211 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaagtatc 309  Q
    ||||||||||| |||||||| | ||  |  ||||| |||||||| | | |||||||||||||||  |||||| ||||  ||| | ||||||  |||||||    
T  56516094 taataaagtccttagaatagatggttagagtaatgaaacattaattgtgacttaattgtgagacttcattaa-catatagaacattattcttgaagtatc 56516192  T
Q  310 cgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
      |||||||||||||||| |||    ||||  |||||| ||||||||||||||||||||||||    
T  56516193 tatagtcaagctttattgtgaataacgatagtattaaaacatagagactattatgtaggtaga 56516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 5668412 - 5668371
Alignment:
Q  96 taatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  5668412 taatagccaatctatattgattgtgtttggttttgtatcatg 5668371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 8845118 - 8845166
Alignment:
Q  89 taagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8845118 taagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8845166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 8858082 - 8858130
Alignment:
Q  89 taagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||||    
T  8858082 taagtcctaatagccaatctatgttgattgagtttgactttgtatcatg 8858130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 18262136 - 18262176
Alignment:
Q  97 aatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  18262136 aatagccaatctatgttgaatgggtttggctttgtatcatg 18262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 39074270 - 39074218
Alignment:
Q  310 cgtagtcaagctttattgagaagtgggatatcattaaagcatagagactatta 362  Q
    ||||||||  |||||||| |||||| |||||||||||||||| ||||||||||    
T  39074270 cgtagtcatactttattgtgaagtgagatatcattaaagcatggagactatta 39074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 11161972 - 11161913
Alignment:
Q  223 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaa 282  Q
    ||||||||||| || |||||||||||||  |||| | ||||||||||||||| |||||||    
T  11161972 tagaatagttaatcagtttaatggaacacaaagtgtgacttaattgtgagactccattaa 11161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 20311207 - 20311261
Alignment:
Q  83 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||| |||||  ||||||||||||| |||| ||||| |||||||||||||||||    
T  20311207 ttggagtaagctgtaatagccaatctgtattcattggatttggctttgtatcatg 20311261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 379
Target Start/End: Complemental strand, 30040919 - 30040750
Alignment:
Q  211 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaa-gtat 308  Q
    ||||||||| |||||||||| |||| ||| |||| | | ||||||| | |||||||  |||||   |||||| ||||| ||| |||||||| ||| ||||    
T  30040919 taataaagttcctagaatagatagttcgtgtaatagtatattaagtgtgacttaatcatgagattacattaa-cataaagaacactattcttaaatgtat 30040821  T
Q  309 ccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatga 379  Q
    |  ||||||||| ||| |  ||| |||||||  | |||||||| ||||||||||||||  |||||||||||    
T  30040820 ctatagtcaagcgttaatatgaattgggataataataaagcatcgagactattatgtatatagactgatga 30040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 24699958 - 24700006
Alignment:
Q  89 taagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||| |||||||||||||||||  ||||| |||||||||||    
T  24699958 taagcccgaataaccaatctatattgattgaatttggttttgtatcatg 24700006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 18252030 - 18252237
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252030 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18252129  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252130 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18252229  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  18252230 ctgatgat 18252237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 18532721 - 18532514
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18532721 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgag 18532622  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18532621 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtagataga 18532522  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  18532521 ctgatgat 18532514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 27131616 - 27131409
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131616 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27131517  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27131516 accccattaaacataaggaaactattctcaaagtatttgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 27131417  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  27131416 ctgatgat 27131409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 21171438 - 21171233
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  21171438 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagac 21171339  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  21171338 cccgttgaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagact 21171239  T
Q  375 gatgat 380  Q
    ||||||    
T  21171238 gatgat 21171233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 27310782 - 27310577
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27310782 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 27310683  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    | | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27310682 cacgttgaacataaggaaactattcttaaagtatcagtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtgggtagact 27310583  T
Q  375 gatgat 380  Q
    ||||||    
T  27310582 gatgat 27310577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 16359240 - 16359035
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  16359240 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagac 16359141  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  16359140 cccgttaaacataaggaaactattcttaaagtaaccctagtcaagctttattgagaaatggaatatcattaaagcatagagactattatgtgggtagact 16359041  T
Q  375 gatgat 380  Q
    ||||||    
T  16359040 gatgat 16359035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 36816831 - 36816633
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| || |||    
T  36816831 ttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccgtta 36816732  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  36816731 aacataaggacattattcttaaagtatccatagtcaagctttattgagaagtgggataccattaaagcatagagactattatgtggatagactgatgat 36816633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 3856126 - 3855919
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3856126 acaaggcatttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgag 3856027  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||| | |||||| ||| |||  |||||||| |||||||| |||||||||||| |||||||||| |||||||||| || ||||||    
T  3856026 accccattaaacataaggacattattcttaaaatatttgtagtcaaactttattgtgaagtgggatattattaaagcatggagactattacgtgggtaga 3855927  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  3855926 ctgatgat 3855919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 22657429 - 22657221
Alignment:
Q  173 acaaggcaattctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtga 271  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  22657429 acaagacatttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtga 22657330  T
Q  272 gaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtag 371  Q
    |||||| ||||||||||||| || ||||| ||||| ||  |||||||||||||||  ||| || ||||||||||||||||||||||||| |||| | |||    
T  22657329 gacccctttaaacataaggacacaattcttaaagtgtctctagtcaagctttattctgaaatgagatatcattaaagcatagagactatcatgtggatag 22657230  T
Q  372 actgatgat 380  Q
    |||||||||    
T  22657229 actgatgat 22657221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 27277753 - 27277557
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||| ||||| || | ||||||| | ||||||   |||    
T  27277753 ttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatta-gtgtgacttaatcgcgagacctt-tta 27277656  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    | |  || || | |||||| |||||||||||||||| ||||||||| |||  |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  27277655 accgaaatgacattattcttaaagtatccgtagtcaggctttattgtgaaaagggataacattaaagcatagagactattatgtgggtagaccgatgat 27277557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 207 - 380
Target Start/End: Complemental strand, 12006712 - 12006539
Alignment:
Q  207 aaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 306  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||| |  |||||| |||||||||||| ||||||||||| | |||| | |||      
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataaggacattattattaaaac 12006613  T
Q  307 atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    || ||||||||||| ||| || |||| |||||| ||||||| | |||||| | ||||||   ||||||||||||    
T  12006612 attcgtagtcaagccttagtgtgaagagggataacattaaaacttagagattgttatgtgcatagactgatgat 12006539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 207 - 380
Target Start/End: Complemental strand, 12014457 - 12014284
Alignment:
Q  207 aaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 306  Q
    |||||||||||||| ||||||||  ||||||||||||||||| ||||||| ||| ||||| || ||| |||||||||||||| ||   |||||| |||      
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  307 atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||| |||||||| || |||| ||||||  |||||||| || |||| ||||||| |||||| |||||||    
T  12014357 atccgtagttaagctttagtgtgaagagggatacgattaaagcgtaaagaccattatgtgggtagaatgatgat 12014284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 18251936 - 18251992
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18251936 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18251992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 18532813 - 18532757
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18532813 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 9918106 - 9917918
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    |||||||||||||||||||| ||||||||||||||| ||       |||||  ||||||| |||||||||||||||||| ||   ||||  ||||||||     
T  9918106 tttattgattttgttttgttacaaaataataaagtcactt------ttagtttgtttaatcgaacattaagtataacttgatcacgaga-tccattaaat 9918014  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||| | |||||| ||| ||||  |||| |||||||||||  |||||||||| |||| ||||||||||| || ||||| |||||  |||||||    
T  9918013 ataaggacattattcttaaaatatctatagttaagctttattgttaagtgggatagcattgaagcatagagaatactatgtcggtaggttgatgat 9917918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27310877 - 27310821
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27310877 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 27310821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 16359336 - 16359280
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||    
T  16359336 tgttggagtaagccctaatagccaatctatattgattgggttaggatttgtatcatg 16359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 21171536 - 21171479
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  21171536 ttgttggagtaagctctaatagccaatctatatggattgagtttggctttgtatcatg 21171479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 36816935 - 36816881
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatc 134  Q
    |||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  36816935 ttgtcggattaagccctaatattcaatctatattgattgggtttggctttgtatc 36816881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 3856221 - 3856164
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| || |||||||||||||||| || ||||||||||||| ||||||||||||    
T  3856221 ttgttggagtaggccctaatagccaatccatcttgattgggtttgactttgtatcatg 3856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 22657522 - 22657469
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtat 133  Q
    |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  22657522 ttgttggagtaagccttaatagccaatatatattgattgagtttggctttgtat 22657469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27131704 - 27131652
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  27131704 tgttggaataagccctaatagccaatctat----gttgggtttggctttgtatcatg 27131652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 30720688 - 30720625
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaa 248  Q
    ||||||| |||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||    
T  30720688 tttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 3403248 - 3403325
Alignment:
Q  203 tttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatt 280  Q
    ||||||| ||||||||||  || ||||||||||| | ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3403248 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3403325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 3443571 - 3443494
Alignment:
Q  203 tttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatt 280  Q
    ||||||| ||||||||||  || ||||||||||| | ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3443571 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27277856 - 27277800
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||| || |||  ||||| ||||||||||||    
T  27277856 tgttggagtaagccctaatagccaatctatgttaattatgtttgactttgtatcatg 27277800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 29327784 - 29327991
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29327784 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgag 29327883  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29327884 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29327983  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  29327984 ctgatgat 29327991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 11536269 - 11536062
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11536269 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgag 11536170  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11536169 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11536070  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  11536069 ctgatgat 11536062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 11543187 - 11542980
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11543187 acaatgcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcag 11543088  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11543087 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11542988  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  11542987 ctgatgat 11542980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 15152445 - 15152650
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15152445 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 15152544  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15152545 cccgttaaacatacggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 15152644  T
Q  375 gatgat 380  Q
    ||||||    
T  15152645 gatgat 15152650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 15148144 - 15148349
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  15148144 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagac 15148243  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15148244 cccgttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 15148343  T
Q  375 gatgat 380  Q
    ||||||    
T  15148344 gatgat 15148349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 18561009 - 18561214
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18561009 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagac 18561108  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  18561109 cccgttaaacattaggaaactattcttaaagtatctgtagtcaagctttattgagaggtgggatatcattaaagcatagagactattatgtgggtagact 18561208  T
Q  375 gatgat 380  Q
    ||||||    
T  18561209 gatgat 18561214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 12750828 - 12751033
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12750828 aaggcatttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagac 12750927  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    | | |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  12750928 ctcgttaaacataaagaaactattcttaaagtatccgtagtcaagctttattgagaagttggatatcattaaagcatagagactattatgtggatagact 12751027  T
Q  375 gatgat 380  Q
    ||||||    
T  12751028 gatgat 12751033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 182 - 376
Target Start/End: Original strand, 12738545 - 12738739
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||   |||    
T  12738545 ttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttgtta 12738644  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactga 376  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12738645 aacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagactga 12738739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 18258047 - 18257842
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  18258047 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagac 18257948  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||| |||  |||| ||||| || ||| ||||| |||||||||||| | |||| |    
T  18257947 cccattaaacacaaggacattattcttaaagtatccgtagtcaagtttttttgttaagtaggataacaataatgcataaagactattatgtggatagatt 18257848  T
Q  375 gatgat 380  Q
    ||||||    
T  18257847 gatgat 18257842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 13392160 - 13392338
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||| | |||||| | |||||||| |||||||| | ||||||| |||||| |||||||    
T  13392160 ttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga-cccatta 13392258  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactatt 361  Q
    ||   ||||| | |||||| ||||||||  ||||||| |||||||| |||  |||||| ||||||| |||||||||||||    
T  13392259 aatgaaaggacattattcttaaagtatcaatagtcaaactttattgtgaaaagggataacattaaaacatagagactatt 13392338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 380
Target Start/End: Original strand, 2364917 - 2365101
Alignment:
Q  195 ttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaac 294  Q
    ||||| |||||||||||||||||||| |||||||| ||||||  | |||||||||||||||| |  |||||| |||||| ||||||||||  || || |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  295 tattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||| ||| ||| ||||||||| | |||||| ||| || |||| ||||||| |||||||||||| |||| ||| ||||||||||    
T  2365017 tattcttaaaatattcgtagtcaa-ccttattgtgaaatgagataacattaaaacatagagactatcatgtgggtcgactgatgat 2365101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 11543280 - 11543223
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11543280 ttgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 11543223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 2653331 - 2653275
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2653331 tgttggaataagccctaatagccaatctatattgattgggattggctttgtatcatg 2653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 365
Target Start/End: Original strand, 7396221 - 7396381
Alignment:
Q  206 caaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 304  Q
    |||||||| || ||| |||||||||||||| | ||||| ||||||||||||||| |||||||  |||||||| |||||||||||| ||| |||||| |||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T
Q  305 gtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgt 365  Q
      ||  |||||||||| ||| || ||| |  |||   ||||||||||||||||||||||||    
T  7396321 acatatgtagtcaagccttagtgtgaaatacgatgatattaaagcatagagactattatgt 7396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 12738443 - 12738499
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12738443 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 12738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 11536362 - 11536305
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  11536362 ttgttggaataagccctaatagccactctatattgattggttttggctttgtatcatg 11536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 12750732 - 12750789
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12750732 ttgttggagtaagccctaatagctaatctatattgattgggtttggctttgtatcatg 12750789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 15152349 - 15152406
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15152349 ttgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcatg 15152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 39111822 - 39112002
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||||||||||| |||||||||||  |||||||    ||||  | |||    
T  39111822 ttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaagtacgacttaatcacaagacatcttta 39111920  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattat 363  Q
    |||||||||| ||||||   ||| ||| |  |||| |||||||||| |||  |  ||| |||||||  ||||||||||||||    
T  39111921 aacataaggacactatttcaaaaatattcacagtccagctttattgtgaaacgaaataacattaaaatatagagactattat 39112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 29327689 - 29327745
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcat 136  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29327689 ttgttggagtaagccctaatagccaatctatattgattgggtttggttttgtatcat 29327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 15148049 - 15148105
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  15148049 tgttggagtaagccctaatagccaatctatattaattgggtttggttttgtatcatg 15148105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 13392029 - 13392085
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcat 136  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  13392029 ttgttggagtaagccctaatatccaatctatattgattgtgtttgactttgtatcat 13392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 3132748 - 3132791
Alignment:
Q  247 aacattaagtataacttaattgtgagaccccattaaacataagg 290  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataagg 3132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  223 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataa 288  Q
    ||||||||||||||||||||||| | |||||| |||||||||||  |||||  |||||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 18258143 - 18258087
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||| |||||||||||| ||||||||| |||||| ||||||||||    
T  18258143 tgttggagtaagccctgatagccaatctagattgattggttttggccttgtatcatg 18258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 18560913 - 18560969
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||| | || |||||||| ||||||||| ||||||||||||||||    
T  18560913 tgttggagtaagcccttaaaggcaatctatgttgattgggcttggctttgtatcatg 18560969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 2653239 - 2653207
Alignment:
Q  173 acaaggcaattctttattgattttgttttgttt 205  Q
    |||||||| ||||||||||||||||||||||||    
T  2653239 acaaggcatttctttattgattttgttttgttt 2653207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 6110064 - 6110271
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110064 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 6110163  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110164 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6110263  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  6110264 ctgatgat 6110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 10572799 - 10572592
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572799 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10572700  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572699 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10572600  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  10572599 ctgatgat 10572592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 17781316 - 17781118
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17781316 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 17781217  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17781216 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 17781118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 16482688 - 16482483
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16482688 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16482589  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16482588 cccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 16482489  T
Q  375 gatgat 380  Q
    ||||||    
T  16482488 gatgat 16482483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 15601091 - 15600884
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15601091 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15600992  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600991 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15600892  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  15600891 ctgatgat 15600884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 15607636 - 15607429
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15607636 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15607537  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15607536 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15607437  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  15607436 ctgatgat 15607429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 18522665 - 18522870
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18522665 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18522764  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18522765 cccattaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcatttaagcatagagactattatgtaggtagact 18522864  T
Q  375 gatgat 380  Q
    ||||||    
T  18522865 gatgat 18522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 176 - 380
Target Start/End: Original strand, 13211305 - 13211509
Alignment:
Q  176 aggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 275  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13211305 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 13211404  T
Q  276 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13211405 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagactg 13211504  T
Q  376 atgat 380  Q
    |||||    
T  13211505 atgat 13211509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 13248607 - 13248814
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248607 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 13248706  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13248707 accccattaaacataaggaaactattctcaaagtattcgtagtcaagctttgttgagaagtgggataacattaaagcatagagactattatgtaggtaga 13248806  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  13248807 ctgatgat 13248814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 15357793 - 15357586
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15357793 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgag 15357694  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15357693 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtaga 15357594  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  15357593 ctgatgat 15357586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 10579553 - 10579355
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10579553 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagaccccatta 10579454  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10579453 aacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagactgatgat 10579355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 18519980 - 18520182
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18519980 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18520079  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18520080 cccgttaaacataaggaaactattcttaa---atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 18520176  T
Q  375 gatgat 380  Q
    ||||||    
T  18520177 gatgat 18520182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 19089943 - 19089745
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19089943 ttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagaccccttta 19089844  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19089843 aacataatgaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaatcatagagactattatgtaggtagactgatgat 19089745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 8490488 - 8490702
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8490488 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 8490587  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagact-------attatgt 365  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||    
T  8490588 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactacagacgattatgt 8490687  T
Q  366 aggtagactgatgat 380  Q
    |||||||||||||||    
T  8490688 aggtagactgatgat 8490702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 192 - 380
Target Start/End: Complemental strand, 15342407 - 15342219
Alignment:
Q  192 attttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 291  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  292 aactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15342307 acctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtagactgatgat 15342219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 17200389 - 17200184
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17200389 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatac 17200290  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  17200289 ccctttaaacataatgaaactattcttaaagtatccgtagttaagctttattgagatgtgtgatatcattaaagcatagagactattatgtgggtagact 17200190  T
Q  375 gatgat 380  Q
    ||||||    
T  17200189 gatgat 17200184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 13516813 - 13517018
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13516813 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagac 13516912  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  13516913 cccgttaaacataaggaaacgattcttaaagtatctgtagtcaagctttattgagaagtaggatatcattaaagcacagagactattatgtgggtagact 13517012  T
Q  375 gatgat 380  Q
    ||||||    
T  13517013 gatgat 13517018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 32057098 - 32056900
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| |||    
T  32057098 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccgtta 32056999  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  32056998 aacataaagaaactattcttaaagtgtccgtagtcaaactttattgagaagtgggatatcattaaagcatagagactattatgtgggtagactaatgat 32056900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 173 - 334
Target Start/End: Complemental strand, 18640953 - 18640792
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18640953 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 18640854  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640853 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 1647723 - 1647521
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataa----cttaattgtgagacccc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||    
T  1647723 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagacccc 1647624  T
Q  278 attaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgat 377  Q
     |||||||||||||||||||| | |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||| | |||||||||    
T  1647623 gttaaacataaggaaactatttttaaagtatccgtaatcaagctttattgagaaaagggatataattaaagcatagagactattatgtggatagactgat 1647524  T
Q  378 gat 380  Q
    |||    
T  1647523 gat 1647521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 193 - 361
Target Start/End: Original strand, 16200145 - 16200313
Alignment:
Q  193 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa 292  Q
    |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  16200145 ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagaccccattaaacataaggac 16200244  T
Q  293 actattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactatt 361  Q
    | |||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  16200245 attattcttaaagtattcgtagtcaagatttattgtgaagtgggatatcattaaagcatggagactatt 16200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 173 - 365
Target Start/End: Original strand, 29924971 - 29925163
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  29924971 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29925070  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgt 365  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||    
T  29925071 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29925163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 173 - 365
Target Start/End: Original strand, 29974124 - 29974316
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  29974124 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29974223  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgt 365  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||    
T  29974224 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29974316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 193 - 361
Target Start/End: Original strand, 16200451 - 16200619
Alignment:
Q  193 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa 292  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||     
T  16200451 ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagactccaataaacataaggac 16200550  T
Q  293 actattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactatt 361  Q
    | |||||| ||||||| |||||||||| ||||||| |||||||||| ||||||||||||  ||||||||    
T  16200551 attattcttaaagtattcgtagtcaagatttattgtgaagtgggatgtcattaaagcatgaagactatt 16200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 24253587 - 24253388
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgaga-ccccatt 280  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||||| | || ||||| |||||||||||||||| ||||||| |||||| ||||||     
T  24253587 ttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatccccatc 24253488  T
Q  281 aaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||||| |||||||| |||||||  || |||||  |||||||  ||||| | || ||||||||||||||||||||||||| |||||||| |||||    
T  24253487 aaacataaggacactattcttaaagtatatgtggtcaaaatttattgtaaagtgaggtaacattaaagcatagagactattatgtcggtagactaatgat 24253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 17136465 - 17136566
Alignment:
Q  279 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatg 378  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  17136465 ttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtgggtagactgatg 17136564  T
Q  379 at 380  Q
    ||    
T  17136565 at 17136566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 6109971 - 6110028
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6109971 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 6110028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 13248514 - 13248571
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248514 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 13248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 8490396 - 8490452
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8490396 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 8490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 13211209 - 13211267
Alignment:
Q  79 cttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13211209 cttgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 13211267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 18534758 - 18534820
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 237  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18534758 aaggcatttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtcc 18534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 18641045 - 18640989
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18641045 tgttggaataagccctaatagccaatctatattgattgtgtttggctttgtatcatg 18640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 17136137 - 17136193
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17136137 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 17136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 10579653 - 10579603
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10579653 tgttggaataagccctaatagccaatctatattgattgggtttgactttgt 10579603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15607730 - 15607672
Alignment:
Q  80 ttgttggaataagccctaatagccaatctata-ttgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  15607730 ttgttggaataagccctaatagccaatctatattttattgggtttggctttgtatcatg 15607672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15351294 - 15351237
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  15351294 ttgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15357886 - 15357829
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  15357886 ttgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 15357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 17200484 - 17200427
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17200484 ttgttggagtaagccctaatagccaatctatgttgattgggtttggctttgtagcatg 17200427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 16482782 - 16482727
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16482782 tgttagaataagccctaata-ccaatctatattgattgggtttggctttgtatcatg 16482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 18519885 - 18519941
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  18519885 tgttggagtaagtcctaatagccaatctatattgattgggtttggttttgtatcatg 18519941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 10572891 - 10572840
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgt 131  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10572891 ttgttggaataagccctaatagccaacctatattgattgggtttgactttgt 10572840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 13516717 - 13516775
Alignment:
Q  79 cttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||| |||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  13516717 cttgttggagtaagccctaatagccaatctatgttgattgagtttggctgtgtatcatg 13516775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15601185 - 15601127
Alignment:
Q  80 ttgttggaataagccctaatagccaatctata-ttgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  15601185 ttgttggaataagccctaatagccaatctatattttattgggtttggatttgtatcatg 15601127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 17781415 - 17781358
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  17781415 ttgttggagtaagccctaatagccaatctatattgattgagtttggttttatatcatg 17781358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 18510924 - 18510969
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtc 220  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  18510924 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 19090042 - 19089985
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  19090042 ttgttggagtaagccctaatagccaatctatattgattgagtttggttttatatcatg 19089985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 1647824 - 1647768
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  1647824 tgttggagtaagccctaatagctggtctatattgattgggtttggctttgtatcatg 1647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32057200 - 32057144
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  32057200 tgttggagtaagctctaatagccaatctatgttgattgggtttgactttgtatcatg 32057144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18510828 - 18510885
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||  |||||||||||    
T  18510828 ttgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18510885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18522569 - 18522626
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||  |||||||||||    
T  18522569 ttgttggagtaagccctaatatccaatctatattgattgagtttgattttgtatcatg 18522626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18534662 - 18534719
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  18534662 ttgttgtagtaagccctaatagtcaatctatattgattgagtttggttttgtatcatg 18534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 29924879 - 29924935
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||| | ||||||||||    
T  29924879 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 29974032 - 29974088
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||||||||||| | |||||||||||||| ||||| | ||||||||||    
T  29974032 tgttggagtaagccctaatagtcgatctatattgattgagtttgacattgtatcatg 29974088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 7141 - 6934
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7141 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgag 7042  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7041 accctattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6942  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  6941 ctgatgat 6934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 14157 - 13950
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  14157 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgag 14058  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14057 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 13958  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  13957 ctgatgat 13950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 7234 - 7177
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  7234 ttgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 14249 - 14193
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  14249 tgttggaataagccctaatagccaatctatattgattgagtttggttttgtatcatg 14193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 21940665 - 21940872
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21940665 acaatgcatttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21940764  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21940765 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 21940864  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  21940865 ctgatgat 21940872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 22171491 - 22171694
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22171491 aaggcatttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 22171590  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22171591 cccattaaacata--gaaactattctcaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtaggtagact 22171688  T
Q  375 gatgat 380  Q
    ||||||    
T  22171689 gatgat 22171694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 6094132 - 6094330
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6094132 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgtta 6094231  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||    
T  6094232 aacataaggaaactatttttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatatgggtagagtgatgat 6094330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 175 - 374
Target Start/End: Original strand, 28554885 - 28555084
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28554885 aaggcatttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28554984  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28554985 cccattaaacataatgaaactattctaaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtagact 28555084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 24642658 - 24642856
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24642658 ttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccgtta 24642757  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  24642758 aacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgagatatcattaaagtatagagactattatgtgggtagactgatgat 24642856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 24636863 - 24636987
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  24636863 ttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccgtta 24636962  T
Q  282 aacataaggaaactattctcaaagt 306  Q
    ||||||||||||||||||| |||||    
T  24636963 aacataaggaaactattcttaaagt 24636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 21940573 - 21940629
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21940573 tgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 21940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 22070108 - 22070164
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22070108 tgttggaataagccctaatagccaatctatattgattgggtttggttttgtatcatg 22070164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 377
Target Start/End: Complemental strand, 38232570 - 38232380
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||  |   ||| ||||||||||||  ||| || |||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaataaatttttaggtataacttaatcatgacactccattaaac 38232472  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgat 377  Q
     |||  | | |||||| |||||||  |||||||| ||||||||  ||||| ||||   |||||||||| | |||||| ||| |||||||||||    
T  38232471 gtaa-aatagtattcttaaagtatttgtagtcaaactttattgtaaagtgagatagtcttaaagcataaaaactattttgtgggtagactgat 38232380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 22171395 - 22171452
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  22171395 ttgttggaataagccctaatagccaatctatattgattgggtttgattttgtatcatg 22171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 24642555 - 24642608
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtat 133  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24642555 ttgttggagtaagccctaatagccaatctatattgattgggtttggctttgtat 24642608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 6094031 - 6094087
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6094031 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 6094087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 364
Target Start/End: Complemental strand, 32873019 - 32872857
Alignment:
Q  203 tttcaaaataataaagtccctagaatagttagtccgttta-atggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctc 301  Q
    ||||||||||||||||||| || |||||||  ||| |||| || ||||||||||||| |||||||||||||| | |||| || | |  || | || | |     
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgagatctcattgaaaagagtgacaatactatt 32872920  T
Q  302 aaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatg 364  Q
    ||| |||  ||||| ||| ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  32872919 aaaatatttgtagttaagatttattgtgaagtgggataacatcaaagcatagagactattatg 32872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 28554790 - 28554847
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  28554790 ttgttggagtaagccctaatagccaatctttgttgattgggtttggctttgtatcatg 28554847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 377
Target Start/End: Original strand, 2375027 - 2375208
Alignment:
Q  194 tttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaa 293  Q
    |||||||||||||||||||||||| |||||| |||| ||||||  |||||||||||||| |  || |||||||  ||| | ||||||||||||| | | |    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatttatgatgacttaatcatga-aacccattaaacatacgaata 2375125  T
Q  294 ctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgat 377  Q
     |||| | |||||||  ||||||| | ||||||| | |||| |||| |||||||| |||   ||||||| || |||||| ||||    
T  2375126 ttatttttaaagtatatgtagtcacgatttattgcg-agtgagataacattaaagtatatgaactattaagtgggtagattgat 2375208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 10920234 - 10920297
Alignment:
Q  211 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||||| | ||||| |||||||    
T  10920234 taataaaattcctagaataattagtctgtttaatggaacattaagtatgagttaatcgtgagac 10920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 14984030 - 14983920
Alignment:
Q  269 tgagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtagg 368  Q
    |||||||| |||||||   |||| | |||||| ||||||||  || ||||  ||||||| ||||||||||| |||| ||| |||| ||||||||||| ||    
T  14984030 tgagacccaattaaactataggacattattcttaaagtatctataatcaaaatttattgtgaagtgggataacatt-aagaatagggactattatgtggg 14983932  T
Q  369 tagactgatgat 380  Q
    |||||| |||||    
T  14983931 tagactaatgat 14983920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 2374946 - 2375000
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatc 134  Q
    |||||||||||||||||||||   ||| | |||||||||| ||||||||||||||    
T  2374946 ttgttggaataagccctaataataaatatgtattgattggatttggctttgtatc 2375000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 24636605 - 24636642
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattg 118  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  24636605 tgttggagtaagccataatagccaatctatattgattg 24636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 29308890 - 29309097
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29308890 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29308989  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29308990 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29309089  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  29309090 ctgatgat 29309097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 29315850 - 29316057
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29315850 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29315949  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315950 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29316049  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  29316050 ctgatgat 29316057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 16566525 - 16566320
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16566525 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16566426  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16566425 cccgttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 16566326  T
Q  375 gatgat 380  Q
    ||||||    
T  16566325 gatgat 16566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 27381459 - 27381252
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381459 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27381360  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381359 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27381260  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  27381259 ctgatgat 27381252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 27471842 - 27471635
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471842 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27471743  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471742 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27471643  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  27471642 ctgatgat 27471635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 17684674 - 17684469
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17684674 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 17684575  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17684574 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagact 17684475  T
Q  375 gatgat 380  Q
    ||||||    
T  17684474 gatgat 17684469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 17691647 - 17691440
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691647 acaaggcatttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 17691548  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17691547 accccattaaacataaggaaactattcttaaagtatccgtagtcaagctttagtgagaagtgggatatcattaaagcataaagactattatgtaggtaga 17691448  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  17691447 ctgatgat 17691440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 189182 - 188977
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189182 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 189083  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  189082 cccattaaacataaggaaactattcttaaagtatttgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagact 188983  T
Q  375 gatgat 380  Q
    ||||||    
T  188982 gatgat 188977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 25537364 - 25537159
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  25537364 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagac 25537265  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25537264 cccgttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtagact 25537165  T
Q  375 gatgat 380  Q
    ||||||    
T  25537164 gatgat 25537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 11651725 - 11651930
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11651725 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 11651824  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  11651825 cccattaaaaataaggaaactattctaaaagtatcagtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagact 11651924  T
Q  375 gatgat 380  Q
    ||||||    
T  11651925 gatgat 11651930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 13359474 - 13359269
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||    
T  13359474 aaggcatttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaac 13359375  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
     |||||||||||||  | | |||| | ||||||||||||||||| |||||||| ||| ||||| | ||||||||| ||||||||||||| | | ||||||    
T  13359374 tccattaaacataaaaacattatttttaaagtatccgtagtcaacctttattgtgaaatgggacaacattaaagcgtagagactattatatggatagact 13359275  T
Q  375 gatgat 380  Q
    ||||||    
T  13359274 gatgat 13359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 20553755 - 20553587
Alignment:
Q  212 aataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccg 311  Q
    ||||||||| |||| |||| |||||||||||||| || ||||||||  ||||||| |||||| ||||||||| ||||| | | |||||| |||| |||||    
T  20553755 aataaagtctctaggatagctagtccgtttaatgaaatattaagtacgacttaatcgtgagatcccattaaatataagaatattattcttaaagcatccg 20553656  T
Q  312 tagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||| ||  ||||||| |||||| ||||  ||||||||||| ||| | |||||| ||||||||||||||    
T  20553655 tagtgaatttttattgtgaagtgagataaaattaaagcataaagatttttatgttggtagactgatgat 20553587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 17691737 - 17691683
Alignment:
Q  83 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691737 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 17691683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 27381552 - 27381495
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27381552 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtttcatg 27381495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 27471935 - 27471878
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27471935 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtttcatg 27471878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 29308797 - 29308854
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29308797 ttgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 29315757 - 29315814
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29315757 ttgttggaataagccctaatagccaatctatattgattggttttggctttgtatcatg 29315814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 380
Target Start/End: Original strand, 27925772 - 27925961
Alignment:
Q  196 tgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacat---taagtata--acttaattgtgagaccccattaaacataagg 290  Q
    |||||||||||||||||||||||||| |||||||  ||||  |||||| |||||||   ||||| |   ||||||| ||||||| |||||||||  |||     
T  27925772 tgttttgtttcaaaataataaagtccttagaataactagtatgtttaacggaacataattaagtgtgtgacttaatcgtgagactccattaaactaaaga 27925871  T
Q  291 aaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||| |||||| ||||||||  ||||||| |||||||  ||||||| ||| |||| ||||| | |||||||||||| | || |||||||||    
T  27925872 aaattattcttaaagtatctctagtcaaactttatttggaagtggtatagcattgaagcacaaagactattatgtggataaactgatgat 27925961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 8509941 - 8510115
Alignment:
Q  192 attttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgaga-ccccattaaacataagg 290  Q
    ||||| |||||||| ||||||||||||||  ||||||| ||||||  ||| ||||||||||| |||  |||||||| ||||| |||||||||| || |||    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccccattaaatatgagg 8510040  T
Q  291 aaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgt 365  Q
    |   |||| | |||||||  ||||| ||||||||||  ||| || |||| ||||||| |||| ||||||||||||    
T  8510041 atgatattattaaagtatatgtagttaagctttattatgaaatgagatagcattaaaacataaagactattatgt 8510115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 17684769 - 17684712
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  17684769 ttgttggaataagccctaatagccaatctatgttgaatgggtttggctttgtatcatg 17684712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 17850663 - 17850495
Alignment:
Q  211 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatcc 310  Q
    |||||||||||||| ||||| ||||  ||||  |||||||||| |||  |||||||||||| | || |||||| | ||||| |||||||| ||| |||||    
T  17850663 taataaagtccctataatagctagtttgtttgttggaacattatgtaagacttaattgtgatatccaattaaaaacaaggacactattcttaaattatcc 17850564  T
Q  311 gtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
     |||||||||||| ||| |||||   ||| |||| ||| ||| |||||||||| | ||||||||||||||    
T  17850563 atagtcaagcttt-ttgtgaagtcaaataacattcaagtatatagactattatatgggtagactgatgat 17850495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 11651630 - 11651684
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatca 135  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  11651630 tgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatca 11651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 25537462 - 25537405
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25537462 ttgttggattaagccctaatagccaatctatattgactgagtttggctttgtatcatg 25537405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 379
Target Start/End: Complemental strand, 20736773 - 20736604
Alignment:
Q  211 taataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaa-gtat 308  Q
    ||||||||| |||||||||| |||| ||| |||||| | ||||||| | |||||||  |||||   |||||| ||||| ||| | |||||| ||| ||||    
T  20736773 taataaagttcctagaatagatagttcgtgtaatggtatattaagtttgacttaatcatgagattacattaa-cataaagaacattattcttaaatgtat 20736675  T
Q  309 ccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatga 379  Q
    | |||||||||||||| | |||| |||||||  | |||||| | |||||||||||||| ||||||||||||    
T  20736674 ctgtagtcaagctttaataagaactgggataataataaagcgtcgagactattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 13359569 - 13359512
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||| ||| |||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  13359569 ttgtgggagtaagtcctaatagccaatctatattcattgggtttgactttgtatcatg 13359512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 31258118 - 31258065
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 235  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258118 ttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 16566611 - 16566563
Alignment:
Q  89 taagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  16566611 taagccctaatagccaatctatgttgattgagtttgactttgtatcatg 16566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 189280 - 189221
Alignment:
Q  81 tgttggaataagccctaatagccaatcta---tattgattgggtttggctttgtatcatg 137  Q
    ||||||| ||||||||||||  |||||||   ||||||||||||||||||||||||||||    
T  189280 tgttggagtaagccctaataatcaatctagtatattgattgggtttggctttgtatcatg 189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 16394526 - 16394484
Alignment:
Q  95 ctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||    
T  16394526 ctaatagacaatctatattgattgagtttgactttgtatcatg 16394484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 22259990 - 22259925
Alignment:
Q  189 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaa 254  Q
    ||||||||||| |||| |||||||||||| |||||| ||||  |||||| ||||||  ||||||||    
T  22259990 ttgattttgttatgttgcaaaataataaactccctaaaataactagtccatttaatataacattaa 22259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 21330455 - 21330248
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330455 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21330356  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21330355 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtgga 21330256  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  21330255 ctgatgat 21330248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 192 - 380
Target Start/End: Original strand, 18796525 - 18796713
Alignment:
Q  192 attttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 291  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  18796525 attttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacctcttttaacataagga 18796624  T
Q  292 aactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
     | |||||| ||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  18796625 tattattcttaaattatctgtagtcaagctttattgtgaagtggtatatcattaaagcattgagactattatgtgggtagactgatgat 18796713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 18619814 - 18620011
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||| | |||||||| ||||| |||||||    
T  18619814 ttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga-cccatta 18619912  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||| ||||| | |||||| |||||||| || ||||| |||||||| |||  ||||||  ||||||||||| |||||||||||| ||||| | ||||||    
T  18619913 aacaaaaggatattattcttaaagtatctgtggtcaaactttattgtgaaaagggataatattaaagcatatagactattatgtgggtaggccgatgat 18620011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 19692734 - 19692598
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  | |||||||  ||||| | |||||    
T  19692734 ttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaagcctgacttaatcatgagatctcatta 19692635  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaa 318  Q
    |||  ||||||| |||||| ||||||||| |||||||    
T  19692634 aactaaaggaaattattcttaaagtatccttagtcaa 19692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 365
Target Start/End: Original strand, 20977957 - 20978084
Alignment:
Q  238 gtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtggga 337  Q
    |||||||||||||||||| |||| |||||  ||||| ||||||||| ||||||||| |||||| |||  |||||||||||||||||| || |||||| ||    
T  20977957 gtttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgtagtcaagctttaatgtgaagtgaga 20978056  T
Q  338 tatcattaaagcatagagactattatgt 365  Q
    ||||| ||||||||||||||||||||||    
T  20978057 tatcactaaagcatagagactattatgt 20978084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 36270199 - 36270373
Alignment:
Q  207 aaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaag 305  Q
    |||||||||||||||||||||||||||||    |||| || ||  |||||| | ||||||| |||||||  ||||||||| || || |||||||| |||     
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaaa 36270298  T
Q  306 tatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
     ||||||| |||||||||| || |||| |||||| |||||||| ||| |||||||| ||| ||||||||||||||    
T  36270299 catccgtaatcaagctttagtgtgaagagggataacattaaagtataaagactattgtgtgggtagactgatgat 36270373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 21330549 - 21330493
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330549 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 21330493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 18822115 - 18822290
Alignment:
Q  207 aaaataataaagtccctagaatagttagtccgtttaa-tggaaca-ttaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 304  Q
    ||||||||||||||  |||||| |||||| ||||||| ||||| | |||||| |  |||||| ||||||| |||||||||| ||||| |||||||| |||    
T  18822115 aaaataataaagtctatagaattgttagttcgtttaaatggaaaaattaagtgtggcttaatcgtgagacaccattaaacacaaggacactattcttaaa 18822214  T
Q  305 gtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
      ||  ||| |||||||||| |  |||||||||||||||||||||| | ||| ||||||||   ||||||||||||    
T  18822215 acatatgtaatcaagctttagtttgaagtgggatatcattaaagcagatagattattatgtcaatagactgatgat 18822290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 19692830 - 19692773
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||| ||||||||||||| |||| ||| ||||||| |||||||||||    
T  19692830 ttgttggagtaagccttaatagccaatctgtatttattaggtttggttttgtatcatg 19692773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 364
Target Start/End: Complemental strand, 36802820 - 36802664
Alignment:
Q  209 aataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagta 307  Q
    ||||||||||||| | ||||||||| | ||||||| ||||| ||||| | | |||||||||  |||   ||||||||| || || | |||||| |||  |    
T  36802820 aataataaagtcctttgaatagttaattcgtttaaatggaatattaaatgttacttaattgcaagatatcattaaacacaatgacattattcttaaaaca 36802721  T
Q  308 tccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatg 364  Q
    |||||| ||||| || | ||  |||||||||| |||||||||||| ||| |||||||    
T  36802720 tccgtaatcaagattcagtgtaaagtgggataacattaaagcatatagattattatg 36802664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 12098705 - 12098618
Alignment:
Q  293 actattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||| | ||||||| |||||||||| |||| |  ||| | |||||  | |||| |||||||||||||||||| |||||||||||||    
T  12098705 actatttttaaagtattcgtagtcaagttttaatatgaaattggatagtaataaaacatagagactattatgtatgtagactgatgat 12098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 18852146 - 18852059
Alignment:
Q  293 actattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||| |||||||  |||||| | |||||||| ||||| ||||| |||||||   || |||||||||||| |||||||| |||||    
T  18852146 actattcttaaagtatatgtagtccaactttattgtgaagtaggataacattaaattgtatagactattatgtcggtagactaatgat 18852059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 365
Target Start/End: Complemental strand, 24471792 - 24471643
Alignment:
Q  215 aaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccgtag 314  Q
    |||||||||| |||| |||||| ||||||| |  ||||| || | |||||||||||||||  ||||  ||||||| | | ||||||  |||||||| ||     
T  24471792 aaagtccctaaaatatttagtcggtttaatagc-cattatgtgtgacttaattgtgagacatcatttgacataagaacattattctttaagtatccatac 24471694  T
Q  315 tcaagctttattgagaagtgggatatcattaaagcatagagactattatgt 365  Q
     ||| || ||||   |||||||||| || ||||||||| ||||||||||||    
T  24471693 acaaactctattttaaagtgggataacactaaagcataaagactattatgt 24471643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 22183552 - 22183483
Alignment:
Q  311 gtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    |||||||||||||| || |||   ||||| |||||||| ||||||||||||| || |||||| |||||||    
T  22183552 gtagtcaagctttagtgtgaaaatggataacattaaagtatagagactattacgtgggtagattgatgat 22183483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18796411 - 18796470
Alignment:
Q  80 ttgttggaataagccctaatagccaatctata--ttgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||| ||  ||||||||  ||||||| ||||||||||||||||||    
T  18796411 ttgttggattaagccctaacagaaaatctatatattgattgcgtttggctttgtatcatg 18796470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 18288 - 18495
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18288 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgag 18387  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18388 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18487  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  18488 ctgatgat 18495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 18196 - 18252
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18196 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 18252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 7107 - 7314
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7107 acaaggtatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgag 7206  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7207 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 7306  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  7307 ctgatgat 7314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 7014 - 7071
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7014 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgcatcatg 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 24695673 - 24695466
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695673 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 24695574  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  24695573 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgagatatcaataaagcatagagactattatgtaggtaga 24695474  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  24695473 ctgatgat 24695466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 18570070 - 18569863
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18570070 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgag 18569971  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  18569970 accccgttaaacataaggaaactactcttaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcataaagactattatgttggtaga 18569871  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  18569870 ctgatgat 18569863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 380
Target Start/End: Complemental strand, 19714703 - 19714498
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19714703 aaggcatttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 19714604  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| |||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  19714603 cccgttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagact 19714504  T
Q  375 gatgat 380  Q
    ||||||    
T  19714503 gatgat 19714498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 19707416 - 19707218
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  19707416 ttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccgtta 19707317  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||||||||||| ||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  19707316 aacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagactgatgat 19707218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 361
Target Start/End: Complemental strand, 27347675 - 27347497
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||| ||| || |||||||||| |||||||| | ||||||| |||||| |||||||    
T  27347675 ttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-cccatta 27347577  T
Q  282 aacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactatt 361  Q
    |||  ||||| | |||||| |||||||  ||||||||||||||||| |||  |||||| |||||||||||||||||||||    
T  27347576 aacgaaaggacattattcttaaagtatatgtagtcaagctttattgtgaaaagggataacattaaagcatagagactatt 27347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 22547211 - 22547016
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    |||||| |||||||||| ||| |||||||||||  | ||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||     
T  22547211 tttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgagatctcattaaat 22547112  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    ||| ||| | |||| | ||||||| || |||||| |||||||| |||||| |||| |||||||  |||||||||||||||| | ||||| ||||||    
T  22547111 atatggacattatttttaaagtattcgcagtcaaactttattgtgaagtgagataacattaaaatatagagactattatgtggatagaccgatgat 22547016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 39537962 - 39538071
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||| ||||||||||||||||||||||  | |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  39537962 acaagccatttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgag 39538061  T
Q  273 accccattaa 282  Q
    ||| ||||||    
T  39538062 acctcattaa 39538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 358
Target Start/End: Complemental strand, 17285927 - 17285754
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    ||||||||||||||| ||||||||||||||||  |||  ||||||||||||| ||||||||||||||||||| | ||||||| |||| |||| | |||||    
T  17285927 tttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccctagtaaac 17285828  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagact 358  Q
      || || | |||||| ||||||| | ||||| | |||||||| ||| |||||||  ||||||||||| |||||    
T  17285827 taaatgacattattcttaaagtattcatagtcgatctttattgtgaattgggatagtattaaagcatatagact 17285754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 380
Target Start/End: Complemental strand, 18807175 - 18807034
Alignment:
Q  239 tttaatggaacattaagtataacttaattgtgagaccccattaaacataa-ggaaactattctcaaagtatccgtagtcaagctttattgagaagtggga 337  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||| |||| ||| | |||||| ||||||||  ||||||||| |||||| |||||  ||    
T  18807175 tttaatggaacattaagtgtgacttaatcgtgagacaccattaaa-ataatggacattattcttaaagtatctatagtcaagcgttattgtgaagtaaga 18807077  T
Q  338 tatcattaaagcatagagactattatgtaggtagactgatgat 380  Q
    || || |||||||||||||||||||||  ||||||||||||||    
T  18807076 taacaataaagcatagagactattatgcgggtagactgatgat 18807034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 24695766 - 24695709
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695766 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 24695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 378
Target Start/End: Original strand, 39538701 - 39538793
Alignment:
Q  286 taaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagactgatg 378  Q
    |||||| |||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  39538701 taaggacactattcttaaaatatccatagttaagctttattgtgaagtgggatatcattaaagcatgaagactattatgtgggtagactgatg 39538793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 358
Target Start/End: Complemental strand, 17299080 - 17298907
Alignment:
Q  185 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaac 284  Q
    ||||||||||||||| |||||  |||||||||  |||  ||||||||||||||| |||||||||||||||||   ||||||| |||| |||| | |||||    
T  17299080 tttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaaccctagtaaac 17298981  T
Q  285 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagact 358  Q
      || || | |||||| ||||||| | ||||| | ||||||||  ||||||||||  ||||||||||| |||||    
T  17298980 taaatgacattattcttaaagtattcatagtcgatctttattgttaagtgggatagtattaaagcatatagact 17298907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 19714798 - 19714742
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19714798 tgttggagtaagccctaatagccaatctatattgattgggtttggctttgtatcatg 19714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 31886540 - 31886640
Alignment:
Q  182 ttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccatta 281  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||| |||||| |||||  ||||||| ||||||| ||||||    
T  31886540 ttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagactccatta 31886639  T
Q  282 a 282  Q
    |    
T  31886640 a 31886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 19707519 - 19707462
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19707519 ttgttggagtaagccctaatagccaatctatattgattgagtttggctttgtatcatg 19707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27347778 - 27347722
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27347778 tgttggagtaagccctaatagccaatctatattgattgcgtttggctttgtatcatg 27347722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 33477479 - 33477389
Alignment:
Q  199 tttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataag 289  Q
    ||||||||||||||||||||||| || ||||||||| | | |||||||| |||||||| | |  |||| |||||||| |||||| ||||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaagtgtgatctaatcgtgagacctcattaatcataag 33477389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 18570165 - 18570108
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  18570165 ttgttcgagtaagctctaatagctaatctatattaattgggtttggctttgtatcatg 18570108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 39537870 - 39537925
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcat 136  Q
    ||||||| |||||||||||||||||||||| |||| || |||| ||||||||||||    
T  39537870 tgttggattaagccctaatagccaatctatgttgactgagtttagctttgtatcat 39537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 11479420 - 11479489
Alignment:
Q  223 tagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccc-cattaaacataagga 291  Q
    ||||||| |||||  |||||||| || ||||||| | |||| |||||||||||| |||||||||||||||    
T  11479420 tagaataattagtgtgtttaatgaaatattaagtgtgacttgattgtgagaccctcattaaacataagga 11479489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 993 - 1200
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  993 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgag 1092  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1093 accccattaaacataaagaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 1192  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  1193 ctgatgat 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 901 - 957
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  901 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 173 - 380
Target Start/End: Complemental strand, 26197 - 25990
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 272  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  26197 acaagacatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgag 26098  T
Q  273 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26097 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgaaaagtgggatatcattaaagcatagcgactattatgtaggtaga 25998  T
Q  373 ctgatgat 380  Q
    ||||||||    
T  25997 ctgatgat 25990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 26287 - 26231
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcat 136  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26287 ttgttggaataagccctaatagtcaatctatattgattgggtttggctttgtatcat 26231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 5531 - 5736
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5531 aaggcatttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 5630  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagact 374  Q
    ||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  5631 cccgttaaacataaggaaattattcttaaagtatatgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagact 5730  T
Q  375 gatgat 380  Q
    ||||||    
T  5731 gatgat 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 5435 - 5492
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5435 ttgttgaagtaagccctaatagccaatctatattgtttgggtttggctttgtatcatg 5492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 230545 - 230365
Alignment:
Q  175 aaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  230545 aaggcatttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagac 230446  T
Q  275 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagaga 356  Q
    ||| |||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  230445 ccc-ttaaacataaggaaaccattcttaaagtatttgtagtcaagatttattgagaagtgggatatcattaaagcatagaga 230365  T

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Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 230640 - 230584
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  230640 tgttggagtaagcaataatagccaatctatattgattgggtttggctttgtatcatg 230584  T

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Target: scaffold0203 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 23826 - 23769
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23826 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 23769  T

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Target: scaffold0176 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 8510 - 8446
Alignment:
Q  173 acaaggcaattctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 237  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8510 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 8446  T

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Target: scaffold0176; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 8603 - 8546
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8603 ttgttggaataagccctaatagccaatctatattgattgggttcggctttgtatcatg 8546  T

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Target: scaffold0326 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 16522 - 16579
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16522 ttgttggaataagccctaatagccaatctatattgattgggtttggctttatatcatg 16579  T

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Target: scaffold0705 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 98 - 41
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  98 ttgttggaataagccctaatagccaatctataatgattgattttggctttgtatcatg 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 8944 - 9000
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  8944 tgttggaataagcccaaatagccaatctatgttgaatgggtttggctttgtatcatg 9000  T

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Target: scaffold0565 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 10256 - 10202
Alignment:
Q  83 ttggaataagccctaatagccaatctatattgattgggtttggctttgtatcatg 137  Q
    ||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  10256 ttggagtaagctctaatagccaatctatattgattgagtttgactttgtatcatg 10202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  192 attttgttttgtttcaaaataataaagtccct 223  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

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Target: scaffold0767 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 37 - 1
Alignment:
Q  81 tgttggaataagccctaatagccaatctatattgatt 117  Q
    |||||||||||||||||||||||||||||||||||||    
T  37 tgttggaataagccctaatagccaatctatattgatt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 5877 - 5930
Alignment:
Q  80 ttgttggaataagccctaatagccaatctatattgattgggtttggctttgtat 133  Q
    |||||||| |||| | ||||||||||||||||||||||| ||||| ||||||||    
T  5877 ttgttggagtaagtcataatagccaatctatattgattgagtttgactttgtat 5930  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 92194 - 92267
Alignment:
Q  202 gtttcaaaataataaagtccctagaatagttagtccgtttaa-tggaacattaagtataacttaattgtgagac 274  Q
    |||| ||| |||||||||| ||||||||  ||||   ||||| ||||||||||||||||||||||| |||||||    
T  92194 gttttaaagtaataaagtctctagaatatctagttattttaaatggaacattaagtataacttaatcgtgagac 92267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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