View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_high_18 (Length: 247)
Name: NF13904_high_18
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 52558765 - 52559002
Alignment:
| Q |
1 |
ttaatttcaggtggatataacatatgctcctttcatggaaagatttcaaccgtttttaatggatgtgaaaaattatgacattacagtgggcaggcctaga |
100 |
Q |
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| T |
52558765 |
ttaatttcaggtggatatagcatatgctcctttcatggaaagatttcaaccgtttttaatggatgtgaaaaattatgacattacagtgggcaggcctaga |
52558864 |
T |
|
| Q |
101 |
ctgacagcatggattgaggtagagcatacagtaaaatattatttatttgtgtatgcttattacagttattgagaaaatatgtcatgatatgggaaatcta |
200 |
Q |
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| T |
52558865 |
ctgacagcatggattgaggtagagcatacagtaaaatattatttatttgtgtatgcttattacagttattgagaaaatatgtcatgatatgggaaatcta |
52558964 |
T |
|
| Q |
201 |
cctgtcgttgaatcaaggtcgtttcatggtaacatatt |
238 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
52558965 |
cctgtcgttgaatcaaggtcgttttatggtaacatatt |
52559002 |
T |
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