View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13904_high_29 (Length: 205)

Name: NF13904_high_29
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13904_high_29
NF13904_high_29
[»] chr6 (9 HSPs)
chr6 (1-158)||(34636188-34636345)
chr6 (1-159)||(23260670-23260828)
chr6 (1-160)||(25005143-25005302)
chr6 (1-161)||(32450355-32450514)
chr6 (59-158)||(26182602-26182700)
chr6 (84-161)||(11166587-11166664)
chr6 (55-159)||(13777247-13777349)
chr6 (107-159)||(10751623-10751675)
chr6 (5-158)||(24992418-24992567)
[»] chr5 (5 HSPs)
chr5 (1-158)||(536731-536888)
chr5 (1-159)||(4558064-4558222)
chr5 (1-78)||(536895-536972)
chr5 (72-160)||(27026620-27026708)
chr5 (72-157)||(6308625-6308710)
[»] chr7 (11 HSPs)
chr7 (1-158)||(15874029-15874186)
chr7 (1-150)||(21491588-21491739)
chr7 (1-159)||(22077633-22077789)
chr7 (1-159)||(18367415-18367576)
chr7 (2-160)||(48576331-48576487)
chr7 (23-160)||(9993290-9993427)
chr7 (18-159)||(48654339-48654478)
chr7 (72-162)||(12196729-12196819)
chr7 (118-163)||(11036685-11036730)
chr7 (122-160)||(7503908-7503946)
chr7 (117-159)||(10289388-10289430)
[»] chr3 (8 HSPs)
chr3 (1-159)||(46404654-46404813)
chr3 (1-161)||(5004812-5004972)
chr3 (1-159)||(16975253-16975412)
chr3 (56-160)||(16475277-16475381)
chr3 (1-159)||(11967982-11968129)
chr3 (72-161)||(9104172-9104261)
chr3 (55-148)||(17542813-17542904)
chr3 (117-159)||(7337291-7337333)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-159)||(8840-8998)
[»] chr2 (9 HSPs)
chr2 (8-159)||(32735391-32735542)
chr2 (55-160)||(12774954-12775057)
chr2 (55-160)||(28267692-28267794)
chr2 (6-159)||(1193599-1193751)
chr2 (1-92)||(29270702-29270791)
chr2 (83-159)||(40447433-40447508)
chr2 (84-160)||(23828298-23828374)
chr2 (72-161)||(18292882-18292970)
chr2 (55-143)||(44788531-44788617)
[»] chr1 (10 HSPs)
chr1 (1-159)||(35762142-35762302)
chr1 (24-152)||(37667265-37667393)
chr1 (1-157)||(9537448-9537602)
chr1 (1-161)||(16074708-16074870)
chr1 (37-159)||(21264718-21264840)
chr1 (55-158)||(6835953-6836056)
chr1 (83-159)||(338060-338135)
chr1 (72-166)||(8421567-8421660)
chr1 (84-160)||(24275569-24275645)
chr1 (117-159)||(43407964-43408006)
[»] chr4 (4 HSPs)
chr4 (1-160)||(28969275-28969432)
chr4 (1-126)||(49499045-49499170)
chr4 (73-163)||(41868566-41868655)
chr4 (72-159)||(40458906-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (1-114)||(221-332)
[»] scaffold0120 (1 HSPs)
scaffold0120 (84-163)||(2645-2724)
[»] chr8 (4 HSPs)
chr8 (55-159)||(22816487-22816589)
chr8 (72-157)||(40841568-40841652)
chr8 (84-159)||(20264999-20265074)
chr8 (84-159)||(21051628-21051703)
[»] scaffold0013 (1 HSPs)
scaffold0013 (55-159)||(243170-243274)
[»] scaffold0002 (1 HSPs)
scaffold0002 (84-160)||(356884-356960)
[»] scaffold0069 (1 HSPs)
scaffold0069 (124-160)||(10884-10920)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 34636345 - 34636188
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636345 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 34636246  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636245 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 23260670 - 23260828
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23260670 aatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaagaatctctacct 23260769  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23260770 ctaattcataacataatcctaatacttagtaagaacgtatggggaaaaagcccttacct 23260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 25005302 - 25005143
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25005302 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaagaatctctacct 25005203  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  25005202 ctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacctt 25005143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 32450355 - 32450514
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450355 aatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 32450454  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  32450455 ctaattcataacacaatcctagtacttagtaagaacgtacgggg-aaaagcccttaccttg 32450514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  59 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 158  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| | || |||||||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 11166587 - 11166664
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    ||||| |||||||||| ||| ||||||| |  ||||||  ||||||||||||||||||||||||||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttaccttg 11166664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 13777247 - 13777349
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    |||||||||||||||  |||||| ||| ||| |||||| | ||| ||||||||| ||||| ||||||||| ||| || | ||||| |||||||||| |||    
T  13777247 atattttagttgttt--ttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  155 tacct 159  Q
    |||||    
T  13777345 tacct 13777349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 10751623 - 10751675
Alignment:
Q  107 cataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||    
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacct 10751675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 24992567 - 24992418
Alignment:
Q  5 taattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaa 104  Q
    |||||||| |||| | |||||||||||  ||||||||||||  | ||   |||||||| |||||||  ||||||||| | |||||||| ||||| | |||    
T  24992567 taattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatttctacttataa 24992471  T
Q  105 ttcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 158  Q
    |||||||||||  ||||||||||| ||   || ||| |||||||||||||||||    
T  24992470 ttcataacatatccctagtacttaatatagacatat-gggaaaaagcccttacc 24992418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 536888 - 536731
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536888 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 536789  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536788 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 4558064 - 4558222
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt-tcttttcaacagacaagaatctctacc 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||| ||||||||||||||||||||||    
T  4558064 aatatgattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacc 4558163  T
Q  100 tctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||| ||||||||| |||||| |||||||||   |||||| ||||||||||||||||||    
T  4558164 tctaaatcataacatcatcctaatacttagtatagacgtat-gggaaaaagcccttacct 4558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 536972 - 536895
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536972 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 27026708 - 27026620
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    |||||||||| ||||||||||   |||| ||| || |||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  27026708 ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacctt 27026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 6308710 - 6308625
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 157  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||  | ||| ||||||| |||||| |||||||||||||    
T  6308710 ttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacatttaataagaacctatgggaaaaaagcccttac 6308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 15874029 - 15874186
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15874029 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaagaatctctacct 15874128  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874129 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21491588 - 21491739
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttg--ttcttttcaacagacaagaatctctac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||||| |||||||||||||||    
T  21491588 aatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctac 21491687  T
Q  99 ctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaag 150  Q
    |||||||||||||||| |||||||||||||||| | ||||||||| ||||||    
T  21491688 ctctaattcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 22077789 - 22077633
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||| |||| ||||||||||||||||  |||| | |||||||||||||||||||||    
T  22077789 aatataattaaactaataactttttgaaatggttaaattttaccatataaatttatattttagttgtttt--tcttcttaacagacaagaatctctacct 22077692  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||    
T  22077691 ctaattcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacct 22077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 18367415 - 18367576
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagtt--gtttt-gttcttttcaacagacaagaatctcta 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||  |||||||||||| |||||||||||||    
T  18367415 aatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggttttctttcttttcaacaaacaagaatctcta 18367514  T
Q  98 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||| |||||||||||||  ||||||| |||| || | |||||| ||||||||||||||||||    
T  18367515 cctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacct 18367576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 48576487 - 48576331
Alignment:
Q  2 atataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||| ||||||||||| |||| |  |||||||||||||||| ||||||||||||| || ||||   ||||| ||| || ||||||||||||||    
T  48576487 atataattaaaactaataactttaataagatattaaattttaccatataaattcatattttaattatttt---ctttttaacggataagaatctctacct 48576391  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    |||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||    
T  48576390 ctaattcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacctt 48576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 9993427 - 9993290
Alignment:
Q  23 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctag 122  Q
    ||||||||  ||| |||||||||||| |||  |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  |||||    
T  9993427 ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctag 9993328  T
Q  123 tacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
     ||||||||||||||| |||||||||||||||||||||    
T  9993327 cacttagtaagaacgtgtggggaaaaagcccttacctt 9993290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 48654339 - 48654478
Alignment:
Q  18 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataat 117  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||    
T  48654339 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 48654436  T
Q  118 cctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||||||||||| | ||||||||||||||| |||||||||    
T  48654437 cctagtacttagtatggacgtatggggaaaaaacccttacct 48654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 12196729 - 12196819
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttgt 162  Q
    ||||||| || ||||||||||  ||||| ||| || |||||||| |||| | |||||||||||| ||||||||||||||||||||||||||    
T  12196729 ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttaccttgt 12196819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 11036685 - 11036730
Alignment:
Q  118 cctagtacttagtaagaacgtatggggaaaaagcccttaccttgtg 163  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  11036685 cctagcacttagtaagaacgtgtggggaaaaagcccttatcttgtg 11036730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 7503946 - 7503908
Alignment:
Q  122 gtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacctt 7503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 10289388 - 10289430
Alignment:
Q  117 tcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacct 10289430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 46404654 - 46404813
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404654 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 46404753  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatgggg-aaaaagcccttacct 159  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46404754 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacct 46404813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5004812 - 5004972
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5004812 aatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacct 5004911  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004912 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 5004972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16975412 - 16975253
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16975412 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacaaacaagaatctctacct 16975313  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtat-ggggaaaaagcccttacct 159  Q
    |||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||    
T  16975312 ctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacct 16975253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 16475381 - 16475277
Alignment:
Q  56 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccctt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  156 acctt 160  Q
    |||||    
T  16475281 acctt 16475277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11967982 - 11968129
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttg--ttcttttcaacagacaagaatctctac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||  |||||||||      ||||||||||||    
T  11967982 aatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgtcttcttttca------aagaatctctac 11968075  T
Q  99 ctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |      ||||||||| |||||||||||||||| | |||||| |||||||| |||||||||    
T  11968076 c------tcataacatcatcctagtacttagtatggacgtat-gggaaaaaacccttacct 11968129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 9104261 - 9104172
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||  ||||||||| |||||||||||||||| |||||||||||    
T  9104261 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttaccttg 9104172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 17542813 - 17542904
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa 148  Q
    |||||||| |||||||  ||||||||| ||||||||||  ||||| ||| || |||||| | |||||  |||||||||||||||||||||||||    
T  17542813 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaa 17542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 7337291 - 7337333
Alignment:
Q  117 tcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacct 7337333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 8998 - 8840
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  8998 aatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatttatacct 8899  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8898 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 32735391 - 32735542
Alignment:
Q  8 ttaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 107  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 32735490  T
Q  108 ataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32735491 ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacct 32735542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 12774954 - 12775057
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    ||||||||||||||||  ||||| ||| ||| |||||| | ||| ||||||||| ||||| |||||||||||| ||| | ||||||||||||||||||||    
T  12774954 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct 12775051  T
Q  155 tacctt 160  Q
    ||||||    
T  12775052 tacctt 12775057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 28267692 - 28267794
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    ||||||||||||||||  ||||||||| ||| |||||| | ||| ||||||||| ||||| |||||||||||||||| | |||||| |||||||| ||||    
T  28267692 atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaaccct 28267788  T
Q  155 tacctt 160  Q
    ||||||    
T  28267789 tacctt 28267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 1193751 - 1193599
Alignment:
Q  6 aattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaat 105  Q
    ||||||| |||| ||| ||||||||  ||| | |||||||| | |||  |||||||| ||||||| |||||||||| ||||||||||  ||||| ||  |    
T  1193751 aattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtt 1193652  T
Q  106 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    | |||||| | | |||| ||||||||||||| ||| ||||||||||||||||||    
T  1193651 taataacaaagtactagcacttagtaagaacttat-gggaaaaagcccttacct 1193599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 29270791 - 29270702
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaat 92  Q
    |||||||||||| |||||| ||||||||||  ||||||||||| || | | | ||||||||| ||||||  |||||||||| ||||||||||    
T  29270791 aatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaat 29270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 40447508 - 40447433
Alignment:
Q  83 agacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||||  ||||||||| || |||||||| || ||| |||||||| | |||||||||||||||||||||||||    
T  40447508 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 40447433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 23828298 - 23828374
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    ||||||||| |||||| ||| ||||||||| | |||||  ||||||||||||||| |||| |||||  |||||||||    
T  23828298 gacaagaatttctaccactatttcataacaaagtcctaacacttagtaagaacgtgtgggaaaaaaatccttacctt 23828374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 18292882 - 18292970
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    ||||||| || ||||||||||  ||||||||| || |||||| |  ||||| |||||||| | ||||||||| ||||| |||||||||||    
T  18292882 ttctttttaaaagacaagaattgctacctctacttaataacacag-cctagcacttagtatggacgtatgggaaaaaaacccttaccttg 18292970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 44788617 - 44788531
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggg 143  Q
    |||||||| |||||||  ||||||||| |||||| |||  ||||| ||| || |||||| | |||||  ||||||||||||||||||||    
T  44788617 atattttaattgtttt--tcttttcaaaagacaataattactaccactatttaataacacagtcctaacacttagtaagaacgtatggg 44788531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35762142 - 35762302
Alignment:
Q  1 aatataattaaactaataactttt--ataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctac 98  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35762142 aatatagttaaactaataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctac 35762241  T
Q  99 ctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  35762242 ctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacct 35762302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 37667265 - 37667393
Alignment:
Q  24 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagt 123  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  124 acttagtaagaacgtatggggaaaaagcc 152  Q
    |||||||||||||||||||||||||||||    
T  37667365 acttagtaagaacgtatggggaaaaagcc 37667393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 9537448 - 9537602
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||  ||||| ||||||||||||||||| |||||    
T  9537448 aatataattaaactaataacttttataaaaggttaaattttacaatataaatttatattttacttgttt--ttcttctcaacagacaagaatctatacct 9537545  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 157  Q
    |||||||||||||| ||||||||||| |||| | ||||||| || ||||||||||||    
T  9537546 ctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 16074870 - 16074708
Alignment:
Q  1 aatataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacc 99  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||  ||||||| ||| ||||| |||||||| |    
T  16074870 aatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgttt--ttctttttaacggacaaaaatctctatc 16074773  T
Q  100 tctaattcataa---cataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttg 161  Q
    ||||||||||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||||    
T  16074772 tctaattcataatatcatcatcccagtacttagtatgaacgtatgggaaaaaagcccttaccttg 16074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 21264718 - 21264840
Alignment:
Q  37 attttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaac 136  Q
    |||||||||| | |||  |||||||| ||||||| |||||||||| ||||||||||  ||||| ||  || || ||| |  ||||| |||||||||||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac 21264817  T
Q  137 gtatggggaaaaagcccttacct 159  Q
    |||||||||||||||||||||||    
T  21264818 gtatggggaaaaagcccttacct 21264840  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 6836056 - 6835953
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    |||||||| ||||||| |||||||||| ||||||||||  ||||| ||| || || | | |  ||||| |||||||||||||||||||||||||||||||    
T  6836056 atattttaattgttttcttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagccct 6835957  T
Q  155 tacc 158  Q
    ||||    
T  6835956 tacc 6835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 338135 - 338060
Alignment:
Q  83 agacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||||  ||||||||| || |||||||| || ||| |||||||| | |||||||||||||||||||||||||    
T  338135 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 338060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 8421660 - 8421567
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttgtgagc 166  Q
    ||||||| || ||||||||||  |||| |||| || |||||| |  ||||| |||||||| | ||||||||||||||||||||||||||| ||||    
T  8421660 ttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacgtatggggaaaaagcccttaccttgagagc 8421567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 24275645 - 24275569
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    ||||||||| | |||| ||| |||||||||   |||||| ||||| |||||||||| | ||||||||||||||||||    
T  24275645 gacaagaatttttaccactatttcataacaaggtcctagcacttaataagaacgtacgaggaaaaagcccttacctt 24275569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 43407964 - 43408006
Alignment:
Q  117 tcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacct 43408006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28969275 - 28969432
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  28969275 aatataattaaactaataacttttataaaatgttaaattttaccatataaattaatattttagttgtttt--tcttctcaacagacaagaatttctacct 28969372  T
Q  101 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    |||||||||||||| |||||||||||||||| | ||||||| ||||||| ||||||||||    
T  28969373 ctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacctt 28969432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 49499170 - 49499045
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||| |||||||||||||||||| ||||    
T  49499170 aatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttttcttctcaacagacaagaatctccacct 49499071  T
Q  101 ctaattcataacataatcctagtact 126  Q
    |||||||||||||| |||||||||||    
T  49499070 ctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 41868655 - 41868566
Alignment:
Q  73 tcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttgtg 163  Q
    ||||||||| |||||||||| ||||| ||||||||| ||||| |||||| ||||||||| | ||||||||| ||||||| |||||||||||    
T  41868655 tcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtatggg-aaaaagcacttaccttgtg 41868566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 40458992 - 40458906
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||| || ||||||||||  ||||||||| || |||||| | || ||| |||||||| | |||||||||||||||||||||||||    
T  40458992 ttctttttaaaagacaagaattgctacctctacttaataacacagtc-tagcacttagtatggacgtatggggaaaaagcccttacct 40458906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 332 - 221
Alignment:
Q  1 aatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| || |||  ||||||| |||| ||||||||||||| ||    
T  332 aatataattaaactaataacttttataaaaggttaaattttaccatatagatttatattttaattattt--ttctttttaacaaacaagaatctctatct 235  T
Q  101 ctaattcataacat 114  Q
    ||||||||||||||    
T  234 ctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 2645 - 2724
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttaccttgtg 163  Q
    ||||||||| |||||| ||| || |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttaccttgtg 2724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 22816487 - 22816589
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    |||||||| |||||||  ||||||||| ||||||||||  | ||| ||| || |||||| | |||||  |||||| ||||||||||||||||||||||||    
T  22816487 atattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccct 22816584  T
Q  155 tacct 159  Q
    |||||    
T  22816585 tacct 22816589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
Q  72 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 157  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||  ||||||||||||||||| ||||||||||||||||    
T  40841568 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtat-gggaaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 20264999 - 20265074
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||| |||||| ||| |||| ||||  ||||||| ||||| ||||||||||| |||||||| |||||||||    
T  20264999 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacct 20265074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 21051628 - 21051703
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 159  Q
    ||||||||| |||||| ||| |||| ||||  ||||||| ||||| ||||||||||| |||||||| |||||||||    
T  21051628 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacct 21051703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 243170 - 243274
Alignment:
Q  55 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 154  Q
    |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  ||||  |||||||||||| |||||||||||| ||| |    
T  243170 atattttaattgttttcttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccat 243269  T
Q  155 tacct 159  Q
    |||||    
T  243270 tacct 243274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 356884 - 356960
Alignment:
Q  84 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    ||||||||| |||||| ||| |||| ||||   |||||| ||||||||||||||||||||||||||  |||||||||    
T  356884 gacaagaatttctaccactacttcaaaacacggtcctagcacttagtaagaacgtatggggaaaaaatccttacctt 356960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 10920 - 10884
Alignment:
Q  124 acttagtaagaacgtatggggaaaaagcccttacctt 160  Q
    ||||||||||||||||||||||||||  |||||||||    
T  10920 acttagtaagaacgtatggggaaaaaatccttacctt 10884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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