View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_high_3 (Length: 639)
Name: NF13904_high_3
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 521417 - 521018
Alignment:
| Q |
1 |
atcatgggaaggtcttgttcagagcaggtatagaatcgactgctgaaaagtgatgaatttacacaaatttcagagatccatctcgcgctttgtgccaaca |
100 |
Q |
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| T |
521417 |
atcatgggaaggtcttgttcagagcaggtatagaatcgactgctgaaaagtgatgaatttacacaaatttcagagatccatctcgcgctttgtgccaaca |
521318 |
T |
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| Q |
101 |
acaaagagataagcccaagcagcatcagctctatcaacaaggatcagttcaagttaattaaatataaataat--nnnnnnnnncaatgaagttgccaaag |
198 |
Q |
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| T |
521317 |
acaaagagataagcccaagcagcatcagctctatcaacaaggatcagttcaagttaattaaatatatataataaaaaaaaaaacaatgaagttgccaaag |
521218 |
T |
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| Q |
199 |
attctgatagaaaactgaattaaggtaagcatattattattgaatgttgacactgg-nnnnnnnnnnttctctgctactgatacaaagatgatatctata |
297 |
Q |
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| T |
521217 |
attctgatagaaaactgaaataaggtaagcatattattattgaatgttcacactggaaaaaataaaattctctgctactgatacaaagatgatatctata |
521118 |
T |
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| Q |
298 |
tctaagttagatcaagctttattgctattgcaggaactctcacacaccaatcttagacactggtaactttttcggtggttttctttctcactttccaatc |
397 |
Q |
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| T |
521117 |
tctaagttagatcaagctttattgctattgcaggaactctcacacaccaatcttagacactggtaattttttcagtggttttctttctcactttccaatc |
521018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 453 - 625
Target Start/End: Complemental strand, 520978 - 520807
Alignment:
| Q |
453 |
ccttaattcagtgtttttgagatagttgggtaggaacaacatctttaattaccttctttaattttctccagagaagcaaaaagtgccttccttcttgtct |
552 |
Q |
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| T |
520978 |
ccttaactcaatgtttttgagctagttgg-taggaacaacatctttaattaccttctttaattttctccagagaagcaaaaagtgccttccttcttgtct |
520880 |
T |
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| Q |
553 |
tcttcaaccactgcattgccaagaaaaataagtttcgtgtcctcatgagatataagaaactacttgttgtttt |
625 |
Q |
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| T |
520879 |
tcttcaaccactgcatagccaagaaaaataagtttcgtgtcctcatgagatttaagaaactacttgttgtttt |
520807 |
T |
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