View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_high_4 (Length: 472)
Name: NF13904_high_4
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 44 - 454
Target Start/End: Original strand, 32955629 - 32956027
Alignment:
| Q |
44 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
143 |
Q |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
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| Q |
144 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
243 |
Q |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtcatcatcat---------------aacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
|
| Q |
244 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
32955913 |
T |
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| Q |
344 |
ctgtggttgtgagtaccatgaa---ttgttgttgttgttactgtagaagtttcctgactccattatgccgccgttagtcgcggctgtcgtggcaaccgcg |
440 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
32955914 |
ctgtggttgtgagtaccatgaattgttgttgttgttgttactgtagaagtttcctgactccattatgccaccgttagtcgcagctgtcgtggcaaccgcg |
32956013 |
T |
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