View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_1 (Length: 729)
Name: NF13904_low_1
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 348 - 714
Target Start/End: Original strand, 45220751 - 45221115
Alignment:
| Q |
348 |
atggagatggaagatgaatgagtgaatgaatgtgacgaattctttgcgtgacaagaaaaagggctatgttaatggagggtatggtacattgatgttgata |
447 |
Q |
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| T |
45220751 |
atggagatggaagatgaatgagtgaatgaatgtgatgaattctttgcgtgacaagaaaaagggctatgttaatggagggtatggtacattgatgttgata |
45220850 |
T |
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| Q |
448 |
ttctatgttattgcgtacgcacagaattttattttactaataaacaactcatttcctcagcaaataaaaaacgtaactctcaactgacaggactttgcag |
547 |
Q |
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| T |
45220851 |
ttctatgttattgcgtacgcacagaattttattttactaataaacaactcatttcctcagcaaataaaaaacgtaa--ctcaactgacaggactttgcag |
45220948 |
T |
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| Q |
548 |
tatgcaagatcgtataatgcggagaagtatggtgtctgaggtttgaactccggtcctgtataaattatgcaatatcgctaccaactgaatattatatgta |
647 |
Q |
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| T |
45220949 |
tatgcaagatcgtataatgtggagaagtatggtgtctaaggtttcaacttcggtcttgcataaattatgcaatgtcgctaccaactcaatattatatgta |
45221048 |
T |
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| Q |
648 |
gatcgtgtttaaacatcagattcctcgtttatttttcatctagagctcttcttccattcatgttgat |
714 |
Q |
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| T |
45221049 |
ggtcgtgtttaaacatcagattcctcgtttatttttcatctagagctcttcttccattcatgttgat |
45221115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 9 - 305
Target Start/End: Complemental strand, 9086127 - 9085828
Alignment:
| Q |
9 |
atgaacaacatggtgtataggaagtcttttgaaggtattattgttctacaaattgaaatatctaaagtttttgatattttgaagtagtttggttttaaca |
108 |
Q |
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| T |
9086127 |
atgaacaacatggtgtataggaagtcttttgaaggtattattgttctacaaattgaaatatctaaagtttttgatattttgaagtagtttggttttaaca |
9086028 |
T |
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| Q |
109 |
agttttgcacttggattcatgttattcttcaataggttaagttgta---nnnnnnnataaatgggaagaactgtaggatttgttttgttgcaaaagaggt |
205 |
Q |
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| T |
9086027 |
agttttgcacttggattcatgttattcttcaataggttaagttgtattttttttttataaatgggaagaactgtaggatttgttttgttgcaaaagaggt |
9085928 |
T |
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| Q |
206 |
gttagacaaagagactttctttcacctcttttattttgtgacagacatttgcttggtcacaactacaaataatttcatttgggcgcacagacacgcaaat |
305 |
Q |
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| T |
9085927 |
gttagacaaagagactttctttcacctcttttattttgtgacagacatttgcttggtcacaactacaaataatttcatttgggcgcacagacacgcaaat |
9085828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 635
Target Start/End: Original strand, 15856489 - 15856562
Alignment:
| Q |
563 |
aatgcggagaagtatggtgtctgaggtttgaactccggtcc-tgtataaattatgcaatatcgctaccaactga |
635 |
Q |
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| T |
15856489 |
aatgtggagaagtggggtgtccgaggtttgaaccccggtccctgtataaattatgcaatgtccctaccaactga |
15856562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 635
Target Start/End: Original strand, 2609416 - 2609449
Alignment:
| Q |
602 |
cctgtataaattatgcaatatcgctaccaactga |
635 |
Q |
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| T |
2609416 |
cctgtataaattatgcaatatccctaccaactga |
2609449 |
T |
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