View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_10 (Length: 344)
Name: NF13904_low_10
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 33 - 329
Target Start/End: Complemental strand, 24480367 - 24480071
Alignment:
| Q |
33 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagattccacaatggaggatagggtcagaggggccaaaactattgttggtata |
132 |
Q |
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| T |
24480367 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagactccacaatggaggatagggtcagaggggccaaaagtattgttggtata |
24480268 |
T |
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| Q |
133 |
tgatatatgcacaggtacaaccaaagtgatttaaatgaaacaaagcaagtgcaaaattttaagtttttactcaactcagaggtttgactacaattaaact |
232 |
Q |
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| T |
24480267 |
ggatatatgcacaggtacaaccaaagtgatttaaatgaaacaaaccaagtgcaaatttttaagtttttactcaactcagaggtttgactacaattaaact |
24480168 |
T |
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| Q |
233 |
gcaaaaagaattcccaggatttggatgttataaaatgatagagaaaaaacattaaactattgtttgattcgatcatgcttttcttttccgttggttt |
329 |
Q |
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| T |
24480167 |
gcaaaaagaattcccatgatttggatgttataaaatgatagagaaaaaacataaaactattgtttgattcgatcatgcttttattttccgttggttt |
24480071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 52422201 - 52422287
Alignment:
| Q |
28 |
agaccataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagattccacaatggaggatagggtcagaggggcc |
114 |
Q |
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| T |
52422201 |
agaccataatgctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggcc |
52422287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 42715120 - 42715082
Alignment:
| Q |
149 |
acaaccaaagtgatttaaatgaaacaaagcaagtgcaaa |
187 |
Q |
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| T |
42715120 |
acaaccagagtgattgaaatgaaacaaagcaagtgcaaa |
42715082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 42715066 - 42714997
Alignment:
| Q |
199 |
ttactcaactcagaggtttgactacaattaaactgcaaaaagaattccca-ggatttggatgttataaaa |
267 |
Q |
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| T |
42715066 |
ttactcaactcagaaaatttgctacaaataaactgcaaaaagaattcccatggatatggatattataaaa |
42714997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14150929 - 14150881
Alignment:
| Q |
1 |
aaaggcaccgcttattgcttctctaggagaccataatgctttggtactt |
49 |
Q |
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| T |
14150929 |
aaaggcaccacttattgctgctccaggagaccataatgctttggtactt |
14150881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14150752 - 14150800
Alignment:
| Q |
1 |
aaaggcaccgcttattgcttctctaggagaccataatgctttggtactt |
49 |
Q |
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||||||| | ||||||||| ||| | ||||||||||||||||||||||| |
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| T |
14150752 |
aaaggcatcacttattgctgctccaagagaccataatgctttggtactt |
14150800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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