View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_13 (Length: 278)
Name: NF13904_low_13
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_13 |
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| [»] scaffold0781 (3 HSPs) |
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Alignment Details
Target: scaffold0781 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 4725 - 4615
Alignment:
| Q |
160 |
actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgt |
258 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4725 |
actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctatattcatttattgt |
4626 |
T |
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| Q |
259 |
tcaagaataat |
269 |
Q |
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||||||||||| |
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| T |
4625 |
tcaagaataat |
4615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 4862 - 4784
Alignment:
| Q |
19 |
agtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc |
97 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4862 |
agtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc |
4784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 6268 - 6203
Alignment:
| Q |
205 |
catgtcttttgtgcttcctgtttcttaattcttc-ttcctatattcatttattgttcaagaataat |
269 |
Q |
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| T |
6268 |
catgtcttttgtgcttcttgtttcttaattcttcgtccctatctttgttgattgttcaagaataat |
6203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 2216268 - 2216158
Alignment:
| Q |
160 |
actactacttctttgatttattcatcaa-taattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgt |
258 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2216268 |
actactacttctttgatttattcatcaaataattcgtccttttcatcatgtcttttgtgcttcctgtttcttaattcttcgtcctatattcatttattgt |
2216169 |
T |
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| Q |
259 |
tcaagaataat |
269 |
Q |
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||||||||||| |
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| T |
2216168 |
tcaagaataat |
2216158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 2216405 - 2216327
Alignment:
| Q |
19 |
agtttctgcgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgcgattcatc |
97 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2216405 |
agtttctacgtagttcttcatcttatttgttcgatcttcattctctattcgcaatcatccattgattttgtgattcatc |
2216327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 2217854 - 2217747
Alignment:
| Q |
160 |
actactacttctttgatttattcatcaataattcgtccgtttcatcatgtcttttgtgcttcctgtttcttaattcttcttcctatattcatttattgtt |
259 |
Q |
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||||||| || ||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| || || |||||| |
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| T |
2217854 |
actactatttttttgattgattcatcaat--ttcgtccatttcatcatgtcttttgtgcttcttgtttcttaattcttcgtcctatctttgttgattgtt |
2217757 |
T |
|
| Q |
260 |
caagaataat |
269 |
Q |
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|||||||||| |
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|
| T |
2217756 |
caagaataat |
2217747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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