View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_16 (Length: 254)
Name: NF13904_low_16
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 24482316 - 24482467
Alignment:
| Q |
93 |
atgggagaaatgagttgcatggttgaacgaggaagctgcaggttcatgacatggacgcttggagtgtgtacgtctcattgcggtctttccaccagtgggt |
192 |
Q |
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| T |
24482316 |
atgggagaaatgagttgcatggttgaacgaggaagctgcaggttcatgacatggacgcttggagtgtgtacgtctcattgtagtctttccaccagtgggt |
24482415 |
T |
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| Q |
193 |
gaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatg |
244 |
Q |
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| T |
24482416 |
gaactactgctttcaaggagcaccaaatcctccttgttgaccgatgatgatg |
24482467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 14150673 - 14150458
Alignment:
| Q |
33 |
ctgaagacaccgccttattgtagataatactattctgcatattctcccctatgaaagagaa--tgggagaaatgagttgcatggttgaacgaggaag-ct |
129 |
Q |
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| T |
14150673 |
ctgaagacaccgccttattggagataatattattctgcatattctcttctacaaaggagaaaatgggagaaatgggttgcatggttgaacgaggtgggct |
14150574 |
T |
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| Q |
130 |
gcaggtt-catgacatggacgcttggagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggagcaccaaatcctccttg |
228 |
Q |
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| T |
14150573 |
gaaggttgcaagatgtggacgcttggtgcgtgtacgtctcattgtggtcttttcatgagcaggtgaactactgctttcaaggagcacaaaatcctccttg |
14150474 |
T |
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| Q |
229 |
ttgatcgatgatgatg |
244 |
Q |
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| T |
14150473 |
ttgaccgatgatgatg |
14150458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 14151027 - 14151216
Alignment:
| Q |
57 |
taatactattctgcatattctcccctatgaaagag--aatgggagaaatgagttgcatggttgaacgaggaagctgcaggtt-catgacatggacgcttg |
153 |
Q |
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| T |
14151027 |
taatactattctgcatattctcccctacaaaagaggaaattggagaaatgagttgcatggttgaacgaggg-gctgaagcttgcaggacgtggacgcttg |
14151125 |
T |
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| Q |
154 |
gagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatg |
244 |
Q |
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| T |
14151126 |
gagcgtgtacgtatcattgtggtctttttatgagtgggtgaactactgctttcatggagcacaaaatcctccttgtagactgatgatgatg |
14151216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 52422116 - 52421885
Alignment:
| Q |
17 |
gagtcaagaaagttttctgaagacaccgccttattgtagataatactattctgcatattctcccctatgaaagagaa--tgggagaaatgagttgcatgg |
114 |
Q |
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|||||| |||| ||||||| |||| | |||| ||| | |||| ||||| ||||||||||||||||| |||||| | ||| ||||||||||||||||| |
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| T |
52422116 |
gagtcaggaaatttttctgtagacgctcccttgttggaaataacactatcctgcatattctcccctacaaaagaggaagtggaagaaatgagttgcatgg |
52422017 |
T |
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| Q |
115 |
ttgaacga-ggaagctgcaggtt-catgacatggacgcttggagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggag |
212 |
Q |
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| T |
52422016 |
ttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgcttttagggag |
52421917 |
T |
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| Q |
213 |
caccaaatcctccttgttgatcgatgatgatg |
244 |
Q |
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||| |||||||||||||||| |||||||||| |
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| T |
52421916 |
cacaaaatcctccttgttgactgatgatgatg |
52421885 |
T |
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