View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_21 (Length: 245)
Name: NF13904_low_21
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_21 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 47685989 - 47685765
Alignment:
| Q |
6 |
aagagtttcatattcaacgcaagtttattattgaagacaagagtagataccaagtctcaaagtgggaagcaactaataaggtcaaacaatgtggttgaaa |
105 |
Q |
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| T |
47685989 |
aagagtttcatattcaacgcaaatttattattgaagacaagagtggataccaagtctcaaagtgggaagcaactaataaggtcaaacaatgtggttgaaa |
47685890 |
T |
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| Q |
106 |
atctagaccaagcnnnnnnngagtgagtcattgagaaaaagtgttaatcaaaagaaacaagtattagtgtttgtttgataaagacaaagaaggacagtga |
205 |
Q |
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| T |
47685889 |
atctagaccaagcaaaaaaagagtgagtcactgagaaaaagtgttaatcaaaagaaacaagtattagtgtttgtttgataaagacaaagaaggacagtga |
47685790 |
T |
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| Q |
206 |
ttaaattttcagattcagataagat |
230 |
Q |
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| T |
47685789 |
ttaaattttcagattcagataagat |
47685765 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12282345 - 12282275
Alignment:
| Q |
160 |
aaacaagtattagtgtttgtttgataaagacaaagaaggacagtgattaaattttcagattcagataagat |
230 |
Q |
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| T |
12282345 |
aaacaagtagtaacgttggtttgataaatacaaagaaggacaatgattaaatttttagaatcaaataagat |
12282275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 17263 - 17333
Alignment:
| Q |
160 |
aaacaagtattagtgtttgtttgataaagacaaagaaggacagtgattaaattttcagattcagataagat |
230 |
Q |
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| T |
17263 |
aaacaagtagtagcgttggtttgataaagacaaagaaggacaatgattaaattttcagaatcaaataagat |
17333 |
T |
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