View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_25 (Length: 239)
Name: NF13904_low_25
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 7130220 - 7130440
Alignment:
| Q |
20 |
atagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcgattggat-atgcatct |
118 |
Q |
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| T |
7130220 |
atagcttcctatagctttccagcaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcgattcgattatgcatct |
7130319 |
T |
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| Q |
119 |
ccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataat |
218 |
Q |
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| T |
7130320 |
ccacatgatggttgagtcgaaagacccgtaaggccaccagatttccatgaagccatagaaagcaatatatctctatatcgtagcaaagctctaccataat |
7130419 |
T |
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| Q |
219 |
tgattcattgtttaaaccatg |
239 |
Q |
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||||||||||||||||||||| |
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| T |
7130420 |
tgattcattgtttaaaccatg |
7130440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 7117836 - 7118056
Alignment:
| Q |
20 |
atagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcgattggat-atgcatct |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7117836 |
atagcttcctatagctttccagcaataaacttgtttgcaagatccatagaaaggtgcttaatccaatcgagcttaacatgcttgattggattatgcatct |
7117935 |
T |
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| Q |
119 |
ccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataat |
218 |
Q |
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| T |
7117936 |
ccacatgatggttgagttgaaagacccgtaagaccaccagatttccatgaagccatagaaagcaatatatctctatatcgtagcaaagctctaccataat |
7118035 |
T |
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| Q |
219 |
tgattcattgtttaaaccatg |
239 |
Q |
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| T |
7118036 |
tgattcattgtttaaaccatg |
7118056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 18915571 - 18915687
Alignment:
| Q |
121 |
acatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattg |
220 |
Q |
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|||| |||||| |||||||||||| |||| |||| || ||| | |||||||||||||| |||| |||||| |||||| ||| | |||| ||||| | |
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| T |
18915571 |
acataatggttatgttgaaagacccctaagaccaccaggttttcgggaagccatagaaagttatatctctctacatcgtagcaaagttctgtcataacta |
18915670 |
T |
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| Q |
221 |
attcattgtttaaacca |
237 |
Q |
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| T |
18915671 |
atttattgtttaaacca |
18915687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 47899771 - 47899696
Alignment:
| Q |
160 |
tttccatgaagccatagaaagcaatatatctctatatcgtaacaacgctctgccataattgattcattgtttaaac |
235 |
Q |
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| T |
47899771 |
tttccatgaagccatagaaagctatatctctatagattgtagtaaagctctgtcatagttgattctttgtttaaac |
47899696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 9789634 - 9789676
Alignment:
| Q |
20 |
atagcttcctatagctttccaacaataaacttgtttgcaagaa |
62 |
Q |
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| T |
9789634 |
atagcttcctataactttccagcagtaaacttgtttgcaagaa |
9789676 |
T |
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