View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13904_low_3 (Length: 686)

Name: NF13904_low_3
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13904_low_3
NF13904_low_3
[»] chr3 (8 HSPs)
chr3 (1-676)||(25866688-25867358)
chr3 (368-466)||(20192666-20192765)
chr3 (202-274)||(45590733-45590805)
chr3 (368-440)||(40122813-40122885)
chr3 (363-432)||(2201073-2201143)
chr3 (373-441)||(47904128-47904197)
chr3 (368-427)||(3044319-3044379)
chr3 (435-467)||(20874458-20874490)
[»] chr5 (13 HSPs)
chr5 (484-661)||(30218639-30218816)
chr5 (2-127)||(30218450-30218575)
chr5 (386-438)||(29117009-29117061)
chr5 (368-426)||(14295457-14295516)
chr5 (418-473)||(27153468-27153523)
chr5 (368-438)||(28586826-28586897)
chr5 (363-412)||(32059644-32059694)
chr5 (385-437)||(985573-985625)
chr5 (435-467)||(14257345-14257377)
chr5 (384-428)||(15074824-15074868)
chr5 (363-439)||(26209468-26209544)
chr5 (285-313)||(34160764-34160792)
chr5 (435-471)||(39257544-39257580)
[»] chr8 (7 HSPs)
chr8 (384-471)||(12224976-12225063)
chr8 (387-466)||(26479690-26479769)
chr8 (387-465)||(26820112-26820189)
chr8 (371-426)||(33209283-33209339)
chr8 (363-440)||(12361129-12361207)
chr8 (390-439)||(11119082-11119131)
chr8 (418-466)||(29097108-29097156)
[»] chr6 (8 HSPs)
chr6 (385-439)||(33068639-33068693)
chr6 (363-412)||(2027461-2027511)
chr6 (435-473)||(6963214-6963252)
chr6 (283-313)||(27894079-27894109)
chr6 (403-468)||(34404317-34404382)
chr6 (368-439)||(10452420-10452492)
chr6 (386-438)||(24836278-24836330)
chr6 (386-438)||(34429769-34429821)
[»] scaffold0024 (1 HSPs)
scaffold0024 (363-439)||(27514-27591)
[»] chr1 (9 HSPs)
chr1 (363-435)||(49517012-49517085)
chr1 (435-471)||(14737841-14737877)
chr1 (363-445)||(33527202-33527285)
chr1 (395-473)||(3052771-3052849)
chr1 (206-280)||(6659756-6659830)
chr1 (384-438)||(15360833-15360887)
chr1 (420-473)||(29929734-29929787)
chr1 (435-467)||(48146173-48146205)
chr1 (363-438)||(48830131-48830207)
[»] chr4 (6 HSPs)
chr4 (400-464)||(25717415-25717479)
chr4 (205-243)||(39691068-39691106)
chr4 (438-471)||(52645567-52645600)
chr4 (384-436)||(31038944-31038996)
chr4 (438-466)||(34375876-34375904)
chr4 (286-314)||(50400519-50400547)
[»] chr2 (6 HSPs)
chr2 (384-435)||(5511507-5511558)
chr2 (205-280)||(15120259-15120334)
chr2 (205-280)||(15370242-15370317)
chr2 (388-439)||(27288571-27288622)
chr2 (205-283)||(18884940-18885018)
chr2 (387-439)||(10143110-10143162)
[»] chr7 (4 HSPs)
chr7 (277-331)||(1710745-1710799)
chr7 (421-467)||(39711507-39711553)
chr7 (388-428)||(425903-425943)
chr7 (434-466)||(31691269-31691301)


Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 676
Target Start/End: Original strand, 25866688 - 25867358
Alignment:
Q  1 ttgacgaacatccttcatgataaaatcactaagttcgccgctgaattcaactccagtaggaccacctcccacaacaacacagtgcaaaagcctttgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25866688 ttgacgaacatccttcatgataaaatcactaagttcgccgctgaattcaactccagtaggaccacctcccacaacaacacagtgcaaaagcctttgcttc 25866787  T
Q  101 tcatcttcagaaattcctgtatccaaaataaaacacagagttgatgtacagaaaagtaactgtcatgacttaacaatatattttccatacaaagacaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||    
T  25866788 tcatcttcagaaattcctgtatccaaaataaaacacagaattgatgtacagagaagtaactgtcatgacttaacaatatattttccatactaagactaag 25866887  T
Q  201 agtttgtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatggtaacagctccataaactgttttcag 300  Q
    |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  25866888 agtttgttcgaattgagttatttgatcgtatctactagcgcaataatttgtaagtctgtttgggatagcttgtgataacagctccataaactgttttcag 25866987  T
Q  301 cttattttcataaacactcaagaaaagcttaaaacattgtcgattacctctccgggatagccatgagaacagcttatagattaatgaaaacagtttgatt 400  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25866988 cttattttcataagcactcaagaaaagcttaaaacattgtagattacctctccgggatagccatgaaaacagcttatagatgaatgacaacagtttgatt 25867087  T
Q  401 ttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggcctagaatattgtagcaaacctggaacatca 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||     |||||| ||||||||||||||||||    
T  25867088 ttattttatcttgcattatagaaataacgtatacataagcgcttaattaagtttcttatccaaacatggc-----atattgcagcaaacctggaacatca 25867182  T
Q  501 gatagcatcaaatttaggagcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattccaaaag 600  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25867183 gatagcatcaaatttaggagcaacttccgacgaatttcctgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgactccttgaattccaaaag 25867282  T
Q  601 tagaaggatgtgatcctaatgcaattactagcttatcatatgagactgtaaatttccaaggttctattctctgctc 676  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25867283 tagaaggatgtgatcctagtgcaattactagcttatcatatgagactgtaaatttccaaggttctattgtctgctc 25867358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 368 - 466
Target Start/End: Original strand, 20192666 - 20192765
Alignment:
Q  368 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 466  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||   ||||| ||||| | ||||||||||  ||||||| || || |||||||||||    
T  20192666 aacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcacttaattgagctgtttatccaaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 45590805 - 45590733
Alignment:
Q  202 gtttgtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatg 274  Q
    |||||||||||||||||| ||||| | |||||||||||||||  | |||| || |||||||||| ||||||||    
T  45590805 gtttgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatg 45590733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 40122813 - 40122885
Alignment:
Q  368 aacagcttatagattaatgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagt 440  Q
    |||| ||||||| || ||||||||||||||| |||||||||||||   |||| |||||| | |||||||||||    
T  40122813 aacaacttatagctttatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataagt 40122885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 2201143 - 2201073
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtat 432  Q
    |||| |||||||||||| ||| ||||||||||||||| ||| ||||||||| ||| |||||| || |||||    
T  2201143 atgaaaacagcttatagcttatatgaaaacagtttgactttgttttatctttcataatagaagtagcgtat 2201073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 47904128 - 47904197
Alignment:
Q  373 cttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtg 441  Q
    ||||||||||| ||||||| || ||||||| ||||||| |||| ||||||||||| | ||| ||||||||    
T  47904128 cttatagattatatgaaaatagcttgatttcattttatgttgcgttatagaaatagcttattcataagtg 47904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 3044319 - 3044379
Alignment:
Q  368 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataa 427  Q
    ||||| |||||||||| |||||||||| ||| ||||||||| |||| | ||||||||||||    
T  3044319 aacaggttatagattatatgaaaacagattggttttattttgtctttcgttatagaaataa 3044379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 20874458 - 20874490
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaa 467  Q
    |||||||||||||||||||| ||||||||||||    
T  20874458 ataagtgcttaattaagttgtttatccaaacaa 20874490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 484 - 661
Target Start/End: Original strand, 30218639 - 30218816
Alignment:
Q  484 gcaaacctggaacatcagatagcatcaaatttaggagcaacttccgacgaatttcttgtgcatgatgtacttcgcgaagaaaaatggcatgttcattgac 583  Q
    ||||||||||||| ||||| | ||||||||| ||||||||||| ||||| ||||| |||||||| |  ||||| ||||||||||| ||||||||||  ||    
T  30218639 gcaaacctggaacgtcagacatcatcaaattgaggagcaacttgcgacggatttcctgtgcatggtaaacttcacgaagaaaaattgcatgttcataaac 30218738  T
Q  584 tccttgaattccaaaagtagaaggatgtgatcctaatgcaattactagcttatcatatgagactgtaaatttccaagg 661  Q
    ||| |||||||||||||| |  || |||| ||||| ||||||||||| ||||||||| |||| |||||| ||||||||    
T  30218739 tccatgaattccaaaagtggtgggttgtgctcctagtgcaattactaacttatcataggagattgtaaacttccaagg 30218816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 30218450 - 30218575
Alignment:
Q  2 tgacgaacatccttcatgataaaatcactaagttcgccgctgaattcaactccagtaggaccacctcccacaacaacacagtgcaaaagcctttgcttct 101  Q
    |||||||||||  |||||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| |||||||| || ||||||| |||||    
T  30218450 tgacgaacatctctcatgataaaatcactaagttcaccactaaattcaactcccgtaggaccacctccgacaaccacacagtgtaacagccttttcttct 30218549  T
Q  102 catcttcagaaattcctgtatccaaa 127  Q
    | ||||| ||||| |||| |||||||    
T  30218550 cctcttccgaaatccctgcatccaaa 30218575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 29117009 - 29117061
Alignment:
Q  386 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    ||||||||||||| |||||||||||||   ||||||||||||| |||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaataacatatacataa 29117061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 14295516 - 14295457
Alignment:
Q  368 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaata 426  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||   |||||||||||    
T  14295516 aacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 27153468 - 27153523
Alignment:
Q  418 atagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 473  Q
    ||||||| ||| ||||||||||  || |||||||||| ||||||||||||||||||    
T  27153468 atagaaaaaacttatacataagcactaaattaagttgtttatccaaacaaggccta 27153523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 438
Target Start/End: Original strand, 28586826 - 28586897
Alignment:
Q  368 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    |||||||||||  ||| ||||||||||||||| |||||||||||||   |||||||||||  ||||||||||    
T  28586826 aacagcttataatttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataa 28586897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 32059644 - 32059694
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatctt 412  Q
    |||| |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  32059644 atgaaaacagcttatagcttatatgaaaacagtttgactttattttatctt 32059694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 985625 - 985573
Alignment:
Q  385 tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacata 437  Q
    |||||||||||||| |||||||||||||   |||| |||||||| ||||||||    
T  985625 tgaaaacagtttgactttattttatcttttgttatggaaataacatatacata 985573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 14257377 - 14257345
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaa 467  Q
    |||||||||||||||||||| ||||||||||||    
T  14257377 ataagtgcttaattaagttgtttatccaaacaa 14257345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 15074824 - 15074868
Alignment:
Q  384 atgaaaacagtttgattttattttatcttgcattatagaaataac 428  Q
    ||||||||||||||||| |||| ||||||  ||||||||||||||    
T  15074824 atgaaaacagtttgattatattctatcttttattatagaaataac 15074868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 26209468 - 26209544
Alignment:
Q  363 atgagaacagcttatagattaa--tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    |||| |||||||||||| |||   |||||||| || || ||||||||||||||  ||||||||||||| ||||||||||    
T  26209468 atgaaaacagcttatagcttatattgaaaacaattggactttattttatcttg--ttatagaaataacttatacataag 26209544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 34160792 - 34160764
Alignment:
Q  285 cataaactgttttcagcttattttcataa 313  Q
    |||||||||||||||||||||||||||||    
T  34160792 cataaactgttttcagcttattttcataa 34160764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 39257544 - 39257580
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaaggcc 471  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  39257544 ataagcgcttaattaagttgtttatccaaacaaggcc 39257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 12224976 - 12225063
Alignment:
Q  384 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggcc 471  Q
    ||||||| ||||||| |||||||||||||   |  |||||||||| ||||||||||  ||||||||||||| ||||||||||| ||||    
T  12224976 atgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatccaaacagggcc 12225063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 26479769 - 26479690
Alignment:
Q  387 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 466  Q
    ||||||||||||||||||||||||||  ||||||||| ||   |||||| ||||  ||||||||| || |||||||||||    
T  26479769 aaaacagtttgattttattttatctttgattatagaactagtttatacaaaagtttttaattaagctgtttatccaaaca 26479690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 26820189 - 26820112
Alignment:
Q  387 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaac 465  Q
    |||| ||||||| |||||||||||||   ||||||||||||| ||||| |||| |||||||| ||||| ||||||||||    
T  26820189 aaaatagtttgactttattttatcttttgttatagaaataacttatac-taagcgcttaattgagttgtttatccaaac 26820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 33209283 - 33209339
Alignment:
Q  371 agcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaata 426  Q
    ||||||||| ||| |||||||||||| || ||||||||||||| |||||||||||||    
T  33209283 agcttatagtttatatgaaaacagttcgactttattttatctttcattatagaaata 33209339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 12361207 - 12361129
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagt 440  Q
    |||| |||||||||||| ||| ||||||||| ||||| || ||||||||||   ||||||||||||| |||| ||||||    
T  12361207 atgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaataacttatatataagt 12361129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 11119082 - 11119131
Alignment:
Q  390 acagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    ||||||||| |||||||||||||   ||||||||||| ||||||||||||    
T  11119082 acagtttgactttattttatcttttgttatagaaatatcgtatacataag 11119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 29097156 - 29097108
Alignment:
Q  418 atagaaataacgtatacataagtgcttaattaagttgcttatccaaaca 466  Q
    ||||||||| | ||||||||||| | ||||||||||| |||||||||||    
T  29097156 atagaaatagcttatacataagttcataattaagttgtttatccaaaca 29097108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 33068639 - 33068693
Alignment:
Q  385 tgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    ||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatacataag 33068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 2027461 - 2027511
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatctt 412  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||||||||||||    
T  2027461 atgagaacagcttataggttatatgaaaatagtttgactttattttatctt 2027511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 6963214 - 6963252
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaaggccta 473  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  6963214 ataagtgcttaatttagttgtttatccaaacaaggccta 6963252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 27894109 - 27894079
Alignment:
Q  283 tccataaactgttttcagcttattttcataa 313  Q
    |||||||||||||||||||||||||||||||    
T  27894109 tccataaactgttttcagcttattttcataa 27894079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 34404382 - 34404317
Alignment:
Q  403 attttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaag 468  Q
    ||||||||| |  ||||||||||||   |||||||||  ||||||||||||| |||||||||||||    
T  34404382 attttatctcgtcttatagaaataagtcatacataagcacttaattaagttgtttatccaaacaag 34404317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 10452420 - 10452492
Alignment:
Q  368 aacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    |||| ||||||| ||| ||||||| |||||||||||||||||| ||   ||||||||||| | ||||||||||    
T  10452420 aacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataag 10452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 24836278 - 24836330
Alignment:
Q  386 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    ||||||| ||||| |||||||||||||   ||||||||||||| |||||||||    
T  24836278 gaaaacaatttgactttattttatcttttgttatagaaataacttatacataa 24836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 34429769 - 34429821
Alignment:
Q  386 gaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    |||||||||| || ||||||||||||   |||||||||||||| |||||||||    
T  34429769 gaaaacagttagactttattttatctcttattatagaaataacttatacataa 34429821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 27591 - 27514
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    |||| |||| ||||||| ||| ||||||||| ||||| |||||||||||||   ||||||||||||| ||||||||||    
T  27591 atgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataag 27514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 49517085 - 49517012
Alignment:
Q  363 atgagaacagcttatagattaa-tgaaaacagtttgattttattttatcttgcattatagaaataacgtataca 435  Q
    |||| |||||||||||| |||| |||||||| ||||| |||||||||||||   ||||||||||||| ||||||    
T  49517085 atgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttataca 49517012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 14737841 - 14737877
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaaggcc 471  Q
    ||||||||||||||||| |||||||||||||||||||    
T  14737841 ataagtgcttaattaagctgcttatccaaacaaggcc 14737877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 33527202 - 33527285
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataagtgctta 445  Q
    |||| |||||||||||||||| ||||||||||||||| | |||||||||||   || |||||||| | ||| |||||| |||||    
T  33527202 atgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgctta 33527285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 3052771 - 3052849
Alignment:
Q  395 ttgattttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 473  Q
    ||||||||||||||||||   ||||||||||| | || ||||||| ||||||||||| || |||| |||| | ||||||    
T  3052771 ttgattttattttatctttagttatagaaatagcttacacataagcgcttaattaagctgtttatacaaagagggccta 3052849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 6659830 - 6659756
Alignment:
Q  206 gtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatggtaaca 280  Q
    ||||| |||||||||||| | | |||||||||||||||  | |||| || || |||||||||||||||| |||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatgataaca 6659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 15360887 - 15360833
Alignment:
Q  384 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    ||||||||||||||| |||||||||||||   |||||||||||||  ||||||||    
T  15360887 atgaaaacagtttgactttattttatcttttgttatagaaataactaatacataa 15360833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 29929734 - 29929787
Alignment:
Q  420 agaaataacgtatacataagtgcttaattaagttgcttatccaaacaaggccta 473  Q
    |||||||| |||||||||||  |||||| |||||| ||||||||||| ||||||    
T  29929734 agaaataaagtatacataaggacttaatcaagttgtttatccaaacagggccta 29929787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 48146173 - 48146205
Alignment:
Q  435 ataagtgcttaattaagttgcttatccaaacaa 467  Q
    |||||||||||||||||||| ||||||||||||    
T  48146173 ataagtgcttaattaagttgtttatccaaacaa 48146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 48830131 - 48830207
Alignment:
Q  363 atgagaacagcttatagatta-atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacataa 438  Q
    |||| ||||| |||||| ||| ||||||| ||||||| |||||||||||||   | ||||||||||| |||||||||    
T  48830131 atgaaaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataa 48830207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 25717479 - 25717415
Alignment:
Q  400 tttattttatcttgcattatagaaataacgtatacataagtgcttaattaagttgcttatccaaa 464  Q
    ||||||||||||| |||| |||||||||| ||||||||||  |||||| |||||| |||| ||||    
T  25717479 tttattttatctttcattctagaaataacttatacataagcacttaataaagttgtttattcaaa 25717415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 39691068 - 39691106
Alignment:
Q  205 tgtttgaattgacttatttgatcgtatctactagcataa 243  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39691068 tgtttgaattgacttatttgagcttatctactagcataa 39691106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Complemental strand, 52645600 - 52645567
Alignment:
Q  438 agtgcttaattaagttgcttatccaaacaaggcc 471  Q
    ||||||||||||||||| ||||||||||||||||    
T  52645600 agtgcttaattaagttgtttatccaaacaaggcc 52645567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 31038944 - 31038996
Alignment:
Q  384 atgaaaacagtttgattttattttatcttgcattatagaaataacgtatacat 436  Q
    ||||||||| ||||| ||||||||||||   ||| ||||||||||||||||||    
T  31038944 atgaaaacaatttgactttattttatctattattgtagaaataacgtatacat 31038996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 34375876 - 34375904
Alignment:
Q  438 agtgcttaattaagttgcttatccaaaca 466  Q
    |||||||||||||||||||||||||||||    
T  34375876 agtgcttaattaagttgcttatccaaaca 34375904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 50400547 - 50400519
Alignment:
Q  286 ataaactgttttcagcttattttcataaa 314  Q
    |||||||||||||||||||||||||||||    
T  50400547 ataaactgttttcagcttattttcataaa 50400519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 5511558 - 5511507
Alignment:
Q  384 atgaaaacagtttgattttattttatcttgcattatagaaataacgtataca 435  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||| ||||||    
T  5511558 atgaaaaaagtttgactttattttatatttcattatagaaataacttataca 5511507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 15120334 - 15120259
Alignment:
Q  205 tgtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatggtaaca 280  Q
    |||||| |||||||||||||| | |||||||||||||||  | |||| |  |||||||||| ||||||||| ||||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaaca 15120259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 15370242 - 15370317
Alignment:
Q  205 tgtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatggtaaca 280  Q
    |||||| |||||||||||||| | |||||||| ||||||  |||||| || |||||||||| |  |||||||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttgggacattttatggtaaca 15370317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 27288622 - 27288571
Alignment:
Q  388 aaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    |||||||||||||||||||||||||  |||||||||| ||| | ||||||||    
T  27288622 aaacagtttgattttattttatcttttattatagaaacaacttttacataag 27288571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 18885018 - 18884940
Alignment:
Q  205 tgtttgaattgacttatttgatcgtatctactagcataataatttgtaaggctgtttgggatagcttatggtaacagct 283  Q
    |||||| || |||||||| || |||||||| |  ||||| || |||||||||||||||||| ||||||| | |||||||    
T  18885018 tgtttggatcgacttattcgagcgtatctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagct 18884940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 10143162 - 10143110
Alignment:
Q  387 aaaacagtttgattttattttatcttgcattatagaaataacgtatacataag 439  Q
    |||||||||||| || ||||||||||   ||||||||||||| ||||||||||    
T  10143162 aaaacagtttgacttaattttatcttttgttatagaaataacttatacataag 10143110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 1710799 - 1710745
Alignment:
Q  277 aacagctccataaactgttttcagcttattttcataaacactcaagaaaagctta 331  Q
    |||| |||||||||||||||||||||||||| ||||| | ||| |||| ||||||    
T  1710799 aacatctccataaactgttttcagcttatttccataacctctctagaatagctta 1710745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 39711507 - 39711553
Alignment:
Q  421 gaaataacgtatacataagtgcttaattaagttgcttatccaaacaa 467  Q
    |||||||| |||||||||| |||||||||||||| ||||| ||||||    
T  39711507 gaaataacttatacataagcgcttaattaagttgtttatcgaaacaa 39711553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 425903 - 425943
Alignment:
Q  388 aaacagtttgattttattttatcttgcattatagaaataac 428  Q
    ||||||||||| |||||||||||||| ||||||||| ||||    
T  425903 aaacagtttgactttattttatcttgtattatagaattaac 425943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 466
Target Start/End: Original strand, 31691269 - 31691301
Alignment:
Q  434 cataagtgcttaattaagttgcttatccaaaca 466  Q
    ||||||||||||||||||||| |||||||||||    
T  31691269 cataagtgcttaattaagttgtttatccaaaca 31691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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