View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13904_low_30 (Length: 229)

Name: NF13904_low_30
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13904_low_30
NF13904_low_30
[»] chr2 (19 HSPs)
chr2 (77-193)||(44939558-44939674)
chr2 (6-40)||(4289258-4289292)
chr2 (6-40)||(9542860-9542894)
chr2 (6-40)||(9543486-9543520)
chr2 (6-40)||(28608992-28609026)
chr2 (6-40)||(28609723-28609757)
chr2 (6-39)||(18090844-18090877)
chr2 (6-38)||(4290521-4290553)
chr2 (6-37)||(17838251-17838282)
chr2 (6-40)||(1501663-1501697)
chr2 (6-40)||(1513723-1513757)
chr2 (6-40)||(6931176-6931210)
chr2 (6-40)||(19487312-19487346)
chr2 (6-36)||(44940701-44940731)
chr2 (6-35)||(10874634-10874663)
chr2 (6-39)||(19485152-19485185)
chr2 (7-36)||(25235036-25235065)
chr2 (6-35)||(42782451-42782480)
chr2 (61-94)||(44940622-44940655)
[»] scaffold0230 (1 HSPs)
scaffold0230 (6-40)||(26257-26291)
[»] scaffold0069 (1 HSPs)
scaffold0069 (6-40)||(14425-14459)
[»] chr8 (26 HSPs)
chr8 (6-40)||(4465315-4465349)
chr8 (6-40)||(7390361-7390395)
chr8 (6-40)||(18375788-18375822)
chr8 (6-40)||(25345771-25345805)
chr8 (6-40)||(25618730-25618764)
chr8 (6-40)||(41158421-41158455)
chr8 (9-40)||(1943493-1943524)
chr8 (9-40)||(8162105-8162136)
chr8 (9-40)||(8761428-8761459)
chr8 (9-40)||(25835593-25835624)
chr8 (9-40)||(32844879-32844910)
chr8 (9-40)||(32846256-32846287)
chr8 (6-40)||(9473900-9473934)
chr8 (6-40)||(24055617-24055651)
chr8 (10-40)||(34894596-34894626)
chr8 (6-40)||(36777632-36777666)
chr8 (6-40)||(36778257-36778291)
chr8 (6-40)||(37588351-37588385)
chr8 (6-40)||(40586672-40586706)
chr8 (6-40)||(41532000-41532034)
chr8 (6-39)||(1944965-1944998)
chr8 (6-39)||(8160651-8160684)
chr8 (6-39)||(8762790-8762823)
chr8 (6-39)||(25834229-25834262)
chr8 (6-39)||(32846973-32847006)
chr8 (6-35)||(42244571-42244600)
[»] chr7 (23 HSPs)
chr7 (6-40)||(4849495-4849529)
chr7 (6-40)||(9151196-9151230)
chr7 (6-40)||(17172671-17172705)
chr7 (6-40)||(27733184-27733218)
chr7 (6-40)||(39648212-39648246)
chr7 (6-40)||(39648818-39648852)
chr7 (6-40)||(48527642-48527676)
chr7 (6-40)||(49145123-49145157)
chr7 (6-39)||(29468995-29469028)
chr7 (6-38)||(17171408-17171440)
chr7 (6-38)||(31897661-31897693)
chr7 (9-40)||(24683984-24684015)
chr7 (6-40)||(4850225-4850259)
chr7 (6-40)||(7855935-7855969)
chr7 (6-40)||(31897044-31897078)
chr7 (6-40)||(34872855-34872889)
chr7 (6-40)||(35156343-35156377)
chr7 (6-40)||(44805621-44805655)
chr7 (6-40)||(44806355-44806389)
chr7 (6-36)||(49144999-49145029)
chr7 (6-35)||(7855199-7855228)
chr7 (6-39)||(29468490-29468523)
chr7 (6-35)||(34873597-34873626)
[»] chr6 (13 HSPs)
chr6 (6-40)||(1222161-1222195)
chr6 (6-40)||(4109101-4109135)
chr6 (6-40)||(9978939-9978973)
chr6 (6-40)||(18320504-18320538)
chr6 (6-40)||(33320396-33320430)
chr6 (6-38)||(1220902-1220934)
chr6 (6-38)||(24446309-24446341)
chr6 (6-38)||(35159234-35159266)
chr6 (6-40)||(4896806-4896840)
chr6 (6-40)||(9735927-9735961)
chr6 (6-40)||(15044058-15044092)
chr6 (6-40)||(24447572-24447606)
chr6 (8-40)||(6966468-6966500)
[»] chr5 (27 HSPs)
chr5 (6-40)||(2182630-2182664)
chr5 (6-40)||(6304770-6304804)
chr5 (6-40)||(25695768-25695802)
chr5 (6-40)||(26601514-26601548)
chr5 (6-40)||(30180471-30180505)
chr5 (6-40)||(30181188-30181222)
chr5 (6-40)||(33704986-33705020)
chr5 (6-40)||(34719235-34719269)
chr5 (6-40)||(41692919-41692953)
chr5 (6-39)||(12419411-12419444)
chr5 (6-38)||(34717972-34718004)
chr5 (6-38)||(41289875-41289907)
chr5 (9-40)||(753776-753807)
chr5 (9-40)||(43137870-43137901)
chr5 (6-40)||(2181891-2181925)
chr5 (6-36)||(3890356-3890386)
chr5 (6-40)||(16679885-16679919)
chr5 (6-40)||(16683452-16683486)
chr5 (6-36)||(34725494-34725524)
chr5 (6-40)||(34726227-34726261)
chr5 (6-40)||(36885011-36885045)
chr5 (6-40)||(36885746-36885780)
chr5 (6-40)||(42976251-42976285)
chr5 (6-40)||(42976873-42976907)
chr5 (6-39)||(43136506-43136539)
chr5 (6-38)||(25696387-25696419)
chr5 (6-38)||(41691656-41691688)
[»] chr4 (41 HSPs)
chr4 (6-40)||(20590110-20590144)
chr4 (6-40)||(24944884-24944918)
chr4 (6-40)||(39713726-39713760)
chr4 (6-40)||(46105313-46105347)
chr4 (6-40)||(46106199-46106233)
chr4 (6-40)||(52802711-52802745)
chr4 (6-39)||(2117238-2117271)
chr4 (6-39)||(24944365-24944398)
chr4 (6-39)||(24947601-24947634)
chr4 (6-39)||(47556274-47556307)
chr4 (6-38)||(39714393-39714425)
chr4 (6-38)||(52801406-52801438)
chr4 (9-40)||(8987616-8987647)
chr4 (9-40)||(9888243-9888274)
chr4 (9-40)||(37350516-37350547)
chr4 (9-40)||(43023070-43023101)
chr4 (9-40)||(43023805-43023836)
chr4 (6-40)||(3759057-3759091)
chr4 (6-36)||(8120461-8120491)
chr4 (6-36)||(12680869-12680899)
chr4 (6-40)||(13172726-13172760)
chr4 (6-40)||(16904761-16904795)
chr4 (6-40)||(20590780-20590814)
chr4 (6-36)||(26602743-26602773)
chr4 (6-36)||(26603512-26603542)
chr4 (6-40)||(30527818-30527852)
chr4 (6-40)||(36742030-36742064)
chr4 (6-40)||(39405565-39405599)
chr4 (6-40)||(48808270-48808304)
chr4 (10-39)||(5755379-5755408)
chr4 (6-39)||(8964611-8964644)
chr4 (6-39)||(8988978-8989011)
chr4 (6-35)||(24549200-24549229)
chr4 (6-39)||(29713602-29713635)
chr4 (6-39)||(37351878-37351911)
chr4 (6-39)||(37356777-37356810)
chr4 (6-39)||(39404823-39404856)
chr4 (10-39)||(46419594-46419623)
chr4 (7-36)||(49355293-49355322)
chr4 (6-39)||(50043114-50043147)
chr4 (10-38)||(42348425-42348453)
[»] chr3 (20 HSPs)
chr3 (6-40)||(28979837-28979871)
chr3 (6-40)||(39094328-39094362)
chr3 (6-40)||(48519886-48519920)
chr3 (6-40)||(55290627-55290661)
chr3 (6-39)||(26776667-26776700)
chr3 (8-40)||(9373860-9373892)
chr3 (6-38)||(19893411-19893443)
chr3 (6-38)||(40821948-40821980)
chr3 (6-37)||(9373550-9373581)
chr3 (6-37)||(35855941-35855972)
chr3 (6-37)||(53801633-53801664)
chr3 (6-40)||(4137633-4137667)
chr3 (6-40)||(8527030-8527064)
chr3 (6-40)||(9374054-9374088)
chr3 (6-40)||(29529715-29529749)
chr3 (6-40)||(51656420-51656454)
chr3 (6-40)||(52842963-52842997)
chr3 (6-40)||(55293625-55293659)
chr3 (6-35)||(19360970-19360999)
chr3 (11-39)||(9374197-9374225)
[»] chr1 (28 HSPs)
chr1 (6-40)||(4893745-4893779)
chr1 (6-40)||(5427360-5427394)
chr1 (6-40)||(19320651-19320685)
chr1 (6-40)||(19321270-19321304)
chr1 (6-40)||(29184708-29184742)
chr1 (6-40)||(33363349-33363383)
chr1 (6-40)||(52311226-52311260)
chr1 (6-39)||(1375759-1375792)
chr1 (6-39)||(1828215-1828248)
chr1 (6-39)||(22194699-22194732)
chr1 (6-39)||(33074463-33074496)
chr1 (6-38)||(4892482-4892514)
chr1 (6-38)||(29185973-29186005)
chr1 (6-38)||(33362085-33362117)
chr1 (6-38)||(51964696-51964728)
chr1 (9-40)||(28571450-28571481)
chr1 (6-40)||(33074967-33075001)
chr1 (6-40)||(38896592-38896626)
chr1 (6-40)||(47136906-47136940)
chr1 (6-40)||(47137635-47137669)
chr1 (6-40)||(50562446-50562480)
chr1 (6-40)||(52312000-52312034)
chr1 (6-39)||(1827492-1827525)
chr1 (6-39)||(22198217-22198250)
chr1 (6-39)||(35593663-35593696)
chr1 (6-35)||(46623612-46623641)
chr1 (6-34)||(20130718-20130746)
chr1 (6-38)||(50563249-50563281)
[»] scaffold0057 (1 HSPs)
scaffold0057 (6-38)||(18253-18285)
[»] scaffold0051 (1 HSPs)
scaffold0051 (6-38)||(55336-55368)
[»] scaffold0381 (1 HSPs)
scaffold0381 (9-40)||(10270-10301)
[»] scaffold0032 (1 HSPs)
scaffold0032 (6-37)||(3802-3833)
[»] scaffold0009 (3 HSPs)
scaffold0009 (6-37)||(232989-233020)
scaffold0009 (6-40)||(139352-139386)
scaffold0009 (7-40)||(232356-232389)
[»] scaffold2127 (1 HSPs)
scaffold2127 (6-40)||(748-782)
[»] scaffold0115 (3 HSPs)
scaffold0115 (6-39)||(3788-3821)
scaffold0115 (6-39)||(11528-11561)
scaffold0115 (6-39)||(14789-14822)
[»] scaffold0079 (1 HSPs)
scaffold0079 (6-34)||(9564-9592)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 44939674 - 44939558
Alignment:
Q  77 aactttaatcgtttttccatacggctttgtacatgtttgagaggctcattatttcaaaataaatcgtaatttatttacttttgagttttgaatggaaaga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44939674 aactttaatcgtttttccatacggctttgtacatgtttgagaggctcattatttcaaaataaatcgtaatttatttacttttgagttttgaatggaaaga 44939575  T
Q  177 aggaacttattacgaaa 193  Q
    |||||||||||||||||    
T  44939574 aggaacttattacgaaa 44939558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4289292 - 4289258
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  4289292 aaaattaagcaaagaagttaggttaaatctagggc 4289258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 9542894 - 9542860
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  9542894 aaaattaagcaaagaagttaggttaaatctagggc 9542860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 9543520 - 9543486
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  9543520 aaaattaagcaaagaagttaggttaaatctagggc 9543486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 28608992 - 28609026
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  28608992 aaaattaagcaaagaagttaggttaaatctagggc 28609026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 28609723 - 28609757
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  28609723 aaaattaagcaaagaagttaggttaaatctagggc 28609757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 18090877 - 18090844
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  18090877 aaaattaagcaaagaagttaggttaaatctaggg 18090844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 4290553 - 4290521
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  4290553 aaaattaagcaaagaagttaggttaaatctagg 4290521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 17838251 - 17838282
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  17838251 aaaattaagcaaagaagttaggttaaatctag 17838282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 1501697 - 1501663
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  1501697 aaaattaagcaaagaagttatgttaaatctagggc 1501663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 1513757 - 1513723
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  1513757 aaaattaagcaaataagttaggttaaatctagggc 1513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 6931176 - 6931210
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  6931176 aaaattaagcaaaaaagttaggttaaatctagggc 6931210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 19487312 - 19487346
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  19487312 aaaattaagcaaagaagttaggttaattctagggc 19487346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 44940731 - 44940701
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  44940731 aaaattaagcaaagaagttaggttaaatcta 44940701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 10874663 - 10874634
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  10874663 aaaattaagcaaagaagttaggttaaatct 10874634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 19485185 - 19485152
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||||||||||||| |||||||    
T  19485185 aaaattaagcaaagaagttaggttaattctaggg 19485152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 25235065 - 25235036
Alignment:
Q  7 aaattaagcaaagaagttaggttaaatcta 36  Q
    ||||||||||||||||||||||||||||||    
T  25235065 aaattaagcaaagaagttaggttaaatcta 25235036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 42782451 - 42782480
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  42782451 aaaattaagcaaagaagttaggttaaatct 42782480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 44940655 - 44940622
Alignment:
Q  61 atatttttatctcaccaactttaatcgtttttcc 94  Q
    |||||||||||||||||||||||||||| |||||    
T  44940655 atatttttatctcaccaactttaatcgtatttcc 44940622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 26291 - 26257
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  26291 aaaattaagcaaagaagttaggttaaatctagggc 26257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 14425 - 14459
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  14425 aaaattaagcaaagaagttaggttaaatctagggc 14459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4465349 - 4465315
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  4465349 aaaattaagcaaagaagttaggttaaatctagggc 4465315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 7390361 - 7390395
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  7390361 aaaattaagcaaagaagttaggttaaatctagggc 7390395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 18375822 - 18375788
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  18375822 aaaattaagcaaagaagttaggttaaatctagggc 18375788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 25345771 - 25345805
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  25345771 aaaattaagcaaagaagttaggttaaatctagggc 25345805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 25618764 - 25618730
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  25618764 aaaattaagcaaagaagttaggttaaatctagggc 25618730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 41158421 - 41158455
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  41158421 aaaattaagcaaagaagttaggttaaatctagggc 41158455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 1943493 - 1943524
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  1943493 attaagcaaagaagttaggttaaatctagggc 1943524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 8162136 - 8162105
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  8162136 attaagcaaagaagttaggttaaatctagggc 8162105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 8761428 - 8761459
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  8761428 attaagcaaagaagttaggttaaatctagggc 8761459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 25835624 - 25835593
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  25835624 attaagcaaagaagttaggttaaatctagggc 25835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 32844879 - 32844910
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  32844879 attaagcaaagaagttaggttaaatctagggc 32844910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 32846256 - 32846287
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  32846256 attaagcaaagaagttaggttaaatctagggc 32846287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 9473900 - 9473934
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  9473900 aaaattaagcaaagaagttaggttaaatcttgggc 9473934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 24055617 - 24055651
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  24055617 aaaattaagcaaagaagttaggttaaatcttgggc 24055651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 34894596 - 34894626
Alignment:
Q  10 ttaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||    
T  34894596 ttaagcaaagaagttaggttaaatctagggc 34894626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 36777632 - 36777666
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  36777632 aaaattaagcaaagaagttaggttaattctagggc 36777666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 36778257 - 36778291
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  36778257 aaaattaagcaaagaagttaggttaaatcttgggc 36778291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 37588385 - 37588351
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||| ||||||||||||||||||||    
T  37588385 aaaattaagcaaaggagttaggttaaatctagggc 37588351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 40586706 - 40586672
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  40586706 aaaattaagcaaagaagttaggttaaatcttgggc 40586672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 41532034 - 41532000
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  41532034 aaaattaagcaaagaagttaggttaaatttagggc 41532000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 1944965 - 1944998
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  1944965 aaaattaagcaaataagttaggttaaatctaggg 1944998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 8160684 - 8160651
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  8160684 aaaattaagcaaataagttaggttaaatctaggg 8160651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 8762790 - 8762823
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  8762790 aaaattaagcaaataagttaggttaaatctaggg 8762823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 25834262 - 25834229
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  25834262 aaaattaagcaaataagttaggttaaatctaggg 25834229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 32846973 - 32847006
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  32846973 aaaattaagcaaataagttaggttaaatctaggg 32847006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 42244600 - 42244571
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  42244600 aaaattaagcaaagaagttaggttaaatct 42244571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4849495 - 4849529
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  4849495 aaaattaagcaaagaagttaggttaaatctagggc 4849529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 9151196 - 9151230
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  9151196 aaaattaagcaaagaagttaggttaaatctagggc 9151230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 17172671 - 17172705
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  17172671 aaaattaagcaaagaagttaggttaaatctagggc 17172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 27733218 - 27733184
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  27733218 aaaattaagcaaagaagttaggttaaatctagggc 27733184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 39648246 - 39648212
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  39648246 aaaattaagcaaagaagttaggttaaatctagggc 39648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 39648852 - 39648818
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  39648852 aaaattaagcaaagaagttaggttaaatctagggc 39648818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 48527676 - 48527642
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  48527676 aaaattaagcaaagaagttaggttaaatctagggc 48527642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 49145157 - 49145123
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  49145157 aaaattaagcaaagaagttaggttaaatctagggc 49145123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 29468995 - 29469028
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  29468995 aaaattaagcaaagaagttaggttaaatctaggg 29469028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 17171408 - 17171440
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  17171408 aaaattaagcaaagaagttaggttaaatctagg 17171440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 31897693 - 31897661
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  31897693 aaaattaagcaaagaagttaggttaaatctagg 31897661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 24684015 - 24683984
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  24684015 attaagcaaagaagttaggttaaatctagggc 24683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4850225 - 4850259
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  4850225 aaaattaagcaaagaagttaggttaaatatagggc 4850259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 7855969 - 7855935
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  7855969 aaaattaagcaaagaagttaggttaattctagggc 7855935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 31897078 - 31897044
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  31897078 aaaattaagcaaaaaagttaggttaaatctagggc 31897044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 34872855 - 34872889
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  34872855 aaaattaagcaaagaagttaggttaattctagggc 34872889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 35156377 - 35156343
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  35156377 aaaattaagcaaagaagttaggttaattctagggc 35156343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 44805621 - 44805655
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  44805621 aaaattaagcaaagaagttaggttaattctagggc 44805655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 44806355 - 44806389
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  44806355 aaaattaagcaaagaagttaggttaaatcttgggc 44806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 49145029 - 49144999
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  49145029 aaaattaagcaaagaagttaggttaaatcta 49144999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 7855228 - 7855199
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  7855228 aaaattaagcaaagaagttaggttaaatct 7855199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 29468490 - 29468523
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||| ||||||||    
T  29468490 aaaattaagcaaagaagttaggttacatctaggg 29468523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 34873597 - 34873626
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  34873597 aaaattaagcaaagaagttaggttaaatct 34873626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 1222161 - 1222195
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  1222161 aaaattaagcaaagaagttaggttaaatctagggc 1222195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4109101 - 4109135
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  4109101 aaaattaagcaaagaagttaggttaaatctagggc 4109135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 9978973 - 9978939
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  9978973 aaaattaagcaaagaagttaggttaaatctagggc 9978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 18320504 - 18320538
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  18320504 aaaattaagcaaagaagttaggttaaatctagggc 18320538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 33320430 - 33320396
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  33320430 aaaattaagcaaagaagttaggttaaatctagggc 33320396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 1220902 - 1220934
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  1220902 aaaattaagcaaagaagttaggttaaatctagg 1220934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 24446309 - 24446341
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  24446309 aaaattaagcaaagaagttaggttaaatctagg 24446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 35159234 - 35159266
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  35159234 aaaattaagcaaagaagttaggttaaatctagg 35159266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4896840 - 4896806
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  4896840 aaaattaagcaaagaagttaggttacatctagggc 4896806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 9735961 - 9735927
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  9735961 aaaattaagcaaagaagttaggttaaatcttgggc 9735927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 15044092 - 15044058
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||| |||||    
T  15044092 aaaattaagcaaagaagttaggttaaatccagggc 15044058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 24447572 - 24447606
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||| |||||||||||||||||||||||||    
T  24447572 aaaattaagtaaagaagttaggttaaatctagggc 24447606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 6966500 - 6966468
Alignment:
Q  8 aattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||| |||||||||||||||||||||    
T  6966500 aattaagcaaaaaagttaggttaaatctagggc 6966468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 2182630 - 2182664
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  2182630 aaaattaagcaaagaagttaggttaaatctagggc 2182664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 6304804 - 6304770
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  6304804 aaaattaagcaaagaagttaggttaaatctagggc 6304770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 25695802 - 25695768
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  25695802 aaaattaagcaaagaagttaggttaaatctagggc 25695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 26601548 - 26601514
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  26601548 aaaattaagcaaagaagttaggttaaatctagggc 26601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 30180471 - 30180505
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  30180471 aaaattaagcaaagaagttaggttaaatctagggc 30180505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 30181188 - 30181222
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  30181188 aaaattaagcaaagaagttaggttaaatctagggc 30181222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 33705020 - 33704986
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  33705020 aaaattaagcaaagaagttaggttaaatctagggc 33704986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 34719235 - 34719269
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  34719235 aaaattaagcaaagaagttaggttaaatctagggc 34719269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 41692919 - 41692953
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  41692919 aaaattaagcaaagaagttaggttaaatctagggc 41692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 12419444 - 12419411
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  12419444 aaaattaagcaaagaagttaggttaaatctaggg 12419411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 34717972 - 34718004
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  34717972 aaaattaagcaaagaagttaggttaaatctagg 34718004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 41289907 - 41289875
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  41289907 aaaattaagcaaagaagttaggttaaatctagg 41289875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 753807 - 753776
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  753807 attaagcaaagaagttaggttaaatctagggc 753776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 43137901 - 43137870
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  43137901 attaagcaaagaagttaggttaaatctagggc 43137870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 2181891 - 2181925
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  2181891 aaaattaagcaaataagttaggttaaatctagggc 2181925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 3890386 - 3890356
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  3890386 aaaattaagcaaagaagttaggttaaatcta 3890356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 16679885 - 16679919
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||| ||||||||||||||||||||    
T  16679885 aaaattaagcaaaggagttaggttaaatctagggc 16679919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 16683452 - 16683486
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||| ||||||||||||||||||||    
T  16683452 aaaattaagcaaaggagttaggttaaatctagggc 16683486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 34725524 - 34725494
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  34725524 aaaattaagcaaagaagttaggttaaatcta 34725494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 34726261 - 34726227
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||| ||||||||||||||||||||||||||||    
T  34726261 aaaatttagcaaagaagttaggttaaatctagggc 34726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 36885045 - 36885011
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  36885045 aaaattaagcaaagaagttaggttaaatcttgggc 36885011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 36885780 - 36885746
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  36885780 aaaattaagcaaagaagttaggttaattctagggc 36885746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 42976285 - 42976251
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  42976285 aaaattaagcaaagaagttaggttaattctagggc 42976251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 42976907 - 42976873
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  42976907 aaaattaagcaaagaagttaggttaattctagggc 42976873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 43136539 - 43136506
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  43136539 aaaattaagcaaataagttaggttaaatctaggg 43136506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 25696419 - 25696387
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||| ||||||||||||||||    
T  25696419 aaaattaagcaaagaaattaggttaaatctagg 25696387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 41691656 - 41691688
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    ||||||||||||||||||||||| |||||||||    
T  41691656 aaaattaagcaaagaagttaggtcaaatctagg 41691688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 20590110 - 20590144
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  20590110 aaaattaagcaaagaagttaggttaaatctagggc 20590144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 24944918 - 24944884
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  24944918 aaaattaagcaaagaagttaggttaaatctagggc 24944884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 39713760 - 39713726
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  39713760 aaaattaagcaaagaagttaggttaaatctagggc 39713726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 46105313 - 46105347
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  46105313 aaaattaagcaaagaagttaggttaaatctagggc 46105347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 46106199 - 46106233
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  46106199 aaaattaagcaaagaagttaggttaaatctagggc 46106233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 52802711 - 52802745
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  52802711 aaaattaagcaaagaagttaggttaaatctagggc 52802745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 2117238 - 2117271
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  2117238 aaaattaagcaaagaagttaggttaaatctaggg 2117271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 24944398 - 24944365
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  24944398 aaaattaagcaaagaagttaggttaaatctaggg 24944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 24947634 - 24947601
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  24947634 aaaattaagcaaagaagttaggttaaatctaggg 24947601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 47556307 - 47556274
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  47556307 aaaattaagcaaagaagttaggttaaatctaggg 47556274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 39714425 - 39714393
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  39714425 aaaattaagcaaagaagttaggttaaatctagg 39714393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 52801406 - 52801438
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  52801406 aaaattaagcaaagaagttaggttaaatctagg 52801438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 8987616 - 8987647
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  8987616 attaagcaaagaagttaggttaaatctagggc 8987647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 9888274 - 9888243
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  9888274 attaagcaaagaagttaggttaaatctagggc 9888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 37350516 - 37350547
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  37350516 attaagcaaagaagttaggttaaatctagggc 37350547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 43023070 - 43023101
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  43023070 attaagcaaagaagttaggttaaatctagggc 43023101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 43023805 - 43023836
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  43023805 attaagcaaagaagttaggttaaatctagggc 43023836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 3759057 - 3759091
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  3759057 aaaattaagcaaagaagttaggttaaatcttgggc 3759091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 8120491 - 8120461
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  8120491 aaaattaagcaaagaagttaggttaaatcta 8120461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 12680899 - 12680869
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  12680899 aaaattaagcaaagaagttaggttaaatcta 12680869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 13172726 - 13172760
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  13172726 aaaattaagcaaagaagttaggttaaatcttgggc 13172760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 16904761 - 16904795
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||| |||||||||||||||||||||    
T  16904761 aaaattaagcaaaaaagttaggttaaatctagggc 16904795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 20590780 - 20590814
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  20590780 aaaattaagcaaagaagttaggttaaatcttgggc 20590814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 26602743 - 26602773
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  26602743 aaaattaagcaaagaagttaggttaaatcta 26602773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 26603512 - 26603542
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatcta 36  Q
    |||||||||||||||||||||||||||||||    
T  26603512 aaaattaagcaaagaagttaggttaaatcta 26603542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 30527852 - 30527818
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  30527852 aaaattaagcaaagaagttaggttaaatcttgggc 30527818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 36742064 - 36742030
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  36742064 aaaattaagcaaagaagttaggttaaatcttgggc 36742030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 39405599 - 39405565
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  39405599 aaaattaagcaaagaatttaggttaaatctagggc 39405565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 48808304 - 48808270
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  48808304 aaaactaagcaaagaagttaggttaaatctagggc 48808270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 5755379 - 5755408
Alignment:
Q  10 ttaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||    
T  5755379 ttaagcaaagaagttaggttaaatctaggg 5755408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 8964611 - 8964644
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  8964611 aaaattaagcaaataagttaggttaaatctaggg 8964644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 8988978 - 8989011
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  8988978 aaaattaagcaaataagttaggttaaatctaggg 8989011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 24549200 - 24549229
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  24549200 aaaattaagcaaagaagttaggttaaatct 24549229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 29713602 - 29713635
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||||||| |||||||||||||    
T  29713602 aaaattaagcaaagaagttacgttaaatctaggg 29713635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 37351878 - 37351911
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  37351878 aaaattaagcaaataagttaggttaaatctaggg 37351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 37356777 - 37356810
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  37356777 aaaattaagcaaataagttaggttaaatctaggg 37356810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 39404856 - 39404823
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||| |||||||||||||||||    
T  39404856 aaaattaagcaaagaaattaggttaaatctaggg 39404823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 46419623 - 46419594
Alignment:
Q  10 ttaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||    
T  46419623 ttaagcaaagaagttaggttaaatctaggg 46419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 49355322 - 49355293
Alignment:
Q  7 aaattaagcaaagaagttaggttaaatcta 36  Q
    ||||||||||||||||||||||||||||||    
T  49355322 aaattaagcaaagaagttaggttaaatcta 49355293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 50043114 - 50043147
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||| ||||||||||||||||||||    
T  50043114 aaaattaagcaaataagttaggttaaatctaggg 50043147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 42348453 - 42348425
Alignment:
Q  10 ttaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||    
T  42348453 ttaagcaaagaagttaggttaaatctagg 42348425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 28979871 - 28979837
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  28979871 aaaattaagcaaagaagttaggttaaatctagggc 28979837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 39094328 - 39094362
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  39094328 aaaattaagcaaagaagttaggttaaatctagggc 39094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 48519920 - 48519886
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  48519920 aaaattaagcaaagaagttaggttaaatctagggc 48519886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 55290661 - 55290627
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  55290661 aaaattaagcaaagaagttaggttaaatctagggc 55290627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 26776700 - 26776667
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  26776700 aaaattaagcaaagaagttaggttaaatctaggg 26776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 9373860 - 9373892
Alignment:
Q  8 aattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||    
T  9373860 aattaagcaaagaagttaggttaaatctagggc 9373892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 19893443 - 19893411
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  19893443 aaaattaagcaaagaagttaggttaaatctagg 19893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 40821980 - 40821948
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  40821980 aaaattaagcaaagaagttaggttaaatctagg 40821948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 9373550 - 9373581
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  9373550 aaaattaagcaaagaagttaggttaaatctag 9373581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 35855941 - 35855972
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  35855941 aaaattaagcaaagaagttaggttaaatctag 35855972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 53801633 - 53801664
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  53801633 aaaattaagcaaagaagttaggttaaatctag 53801664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 4137667 - 4137633
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||| |||||    
T  4137667 aaaattaagcaaagaagttaggttaaatcaagggc 4137633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 8527064 - 8527030
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  8527064 aaaattaagcaaagaagttaggttaattctagggc 8527030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 9374054 - 9374088
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  9374054 aaaattaagcaaagaagttaggttaaatttagggc 9374088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 29529749 - 29529715
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||| ||||||||    
T  29529749 aaaattaagcaaagaagttaggttaattctagggc 29529715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 51656454 - 51656420
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  51656454 aaaattaagcaaagaatttaggttaaatctagggc 51656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 52842963 - 52842997
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  52842963 aaaattaagcaaagaagttaagttaaatctagggc 52842997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 55293659 - 55293625
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  55293659 aaaattaagcaaagaagttaggttaaatatagggc 55293625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 19360999 - 19360970
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  19360999 aaaattaagcaaagaagttaggttaaatct 19360970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 9374197 - 9374225
Alignment:
Q  11 taagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||||||||||||||||    
T  9374197 taagcaaagaagttaggttaaatctaggg 9374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4893745 - 4893779
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  4893745 aaaattaagcaaagaagttaggttaaatctagggc 4893779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 5427360 - 5427394
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  5427360 aaaattaagcaaagaagttaggttaaatctagggc 5427394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 19320685 - 19320651
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  19320685 aaaattaagcaaagaagttaggttaaatctagggc 19320651  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 19321304 - 19321270
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  19321304 aaaattaagcaaagaagttaggttaaatctagggc 19321270  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 29184742 - 29184708
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  29184742 aaaattaagcaaagaagttaggttaaatctagggc 29184708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 33363349 - 33363383
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  33363349 aaaattaagcaaagaagttaggttaaatctagggc 33363383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 52311226 - 52311260
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  52311226 aaaattaagcaaagaagttaggttaaatctagggc 52311260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 1375759 - 1375792
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  1375759 aaaattaagcaaagaagttaggttaaatctaggg 1375792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 1828215 - 1828248
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  1828215 aaaattaagcaaagaagttaggttaaatctaggg 1828248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 22194732 - 22194699
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  22194732 aaaattaagcaaagaagttaggttaaatctaggg 22194699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 33074496 - 33074463
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||||||||||||    
T  33074496 aaaattaagcaaagaagttaggttaaatctaggg 33074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 4892482 - 4892514
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  4892482 aaaattaagcaaagaagttaggttaaatctagg 4892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 29186005 - 29185973
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  29186005 aaaattaagcaaagaagttaggttaaatctagg 29185973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 33362085 - 33362117
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  33362085 aaaattaagcaaagaagttaggttaaatctagg 33362117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 51964728 - 51964696
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  51964728 aaaattaagcaaagaagttaggttaaatctagg 51964696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 28571450 - 28571481
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  28571450 attaagcaaagaagttaggttaaatctagggc 28571481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 33075001 - 33074967
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  33075001 aaaattaagcaaagaagttaggttacatctagggc 33074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 38896592 - 38896626
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  38896592 aaaattaagcaaagaagttaggttaaatcttgggc 38896626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 47136906 - 47136940
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  47136906 aaaattaagcaaagaagttatgttaaatctagggc 47136940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 47137635 - 47137669
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  47137635 aaaattaggcaaagaagttaggttaaatctagggc 47137669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 50562446 - 50562480
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  50562446 aaaattaagcaaagaagttaggttaaatatagggc 50562480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 52312000 - 52312034
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||| |||||||||||||    
T  52312000 aaaattaagcaaagaagttagtttaaatctagggc 52312034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 1827492 - 1827525
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||| |||||||||||||||||||||||||    
T  1827492 aaaattaaacaaagaagttaggttaaatctaggg 1827525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 22198250 - 22198217
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||||||| ||||||||    
T  22198250 aaaattaagcaaagaagttaggttacatctaggg 22198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 35593696 - 35593663
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  35593696 aaaattaaggaaagaagttaggttaaatctaggg 35593663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 46623641 - 46623612
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatct 35  Q
    ||||||||||||||||||||||||||||||    
T  46623641 aaaattaagcaaagaagttaggttaaatct 46623612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 20130718 - 20130746
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatc 34  Q
    |||||||||||||||||||||||||||||    
T  20130718 aaaattaagcaaagaagttaggttaaatc 20130746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 50563249 - 50563281
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||| ||||||||||||||||||||||||    
T  50563249 aaaattaaacaaagaagttaggttaaatctagg 50563281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 18285 - 18253
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  18285 aaaattaagcaaagaagttaggttaaatctagg 18253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 55336 - 55368
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagg 38  Q
    |||||||||||||||||||||||||||||||||    
T  55336 aaaattaagcaaagaagttaggttaaatctagg 55368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 10270 - 10301
Alignment:
Q  9 attaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||||||||||||||||||||||||    
T  10270 attaagcaaagaagttaggttaaatctagggc 10301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 3833 - 3802
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  3833 aaaattaagcaaagaagttaggttaaatctag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 232989 - 233020
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctag 37  Q
    ||||||||||||||||||||||||||||||||    
T  232989 aaaattaagcaaagaagttaggttaaatctag 233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 139352 - 139386
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  139352 aaaattaagcaaagaagttaggttaaatcttgggc 139386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 232356 - 232389
Alignment:
Q  7 aaattaagcaaagaagttaggttaaatctagggc 40  Q
    ||||||||||| ||||||||||||||||||||||    
T  232356 aaattaagcaaggaagttaggttaaatctagggc 232389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 748 - 782
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctagggc 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  748 aaaattaagcaaagaagttatgttaaatctagggc 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 3788 - 3821
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||||||||||||||| |||||    
T  3788 aaaattaagcaaagaagttaggttaaatttaggg 3821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 11528 - 11561
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    |||||||||||||||||||||||||||| |||||    
T  11528 aaaattaagcaaagaagttaggttaaatttaggg 11561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 14789 - 14822
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatctaggg 39  Q
    ||||||||||||||||||||| ||||||||||||    
T  14789 aaaattaagcaaagaagttagcttaaatctaggg 14822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 9592 - 9564
Alignment:
Q  6 aaaattaagcaaagaagttaggttaaatc 34  Q
    |||||||||||||||||||||||||||||    
T  9592 aaaattaagcaaagaagttaggttaaatc 9564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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