View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13904_low_7 (Length: 430)
Name: NF13904_low_7
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13904_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 43 - 309
Target Start/End: Complemental strand, 41176353 - 41176086
Alignment:
| Q |
43 |
caatttataattaagcagtgggtatggatacaagaaagaaaataactttaggtaagaaagatgaag-aggatttggaaggaaagaaatgatgaagggaat |
141 |
Q |
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| T |
41176353 |
caatttataattaagcagtgggtatggatacaagaaagaaaataactttaggtaagaaagatgaaggaggatttggaaggaaagaaatgatgaaaggaat |
41176254 |
T |
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| Q |
142 |
ataggcgtccagcatttcatattagggtttatatttctctacaaaattaaaacgttttcatataaagaaaccaaaaaatatatatgttttagagaaatgt |
241 |
Q |
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| T |
41176253 |
ataggcgtccagcatttcatattagggtttatatttctctacaaaattaaaacgttttcatatggagaaaccaaaaaatatatatgttttagagaaatgt |
41176154 |
T |
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| Q |
242 |
cttgaaggattttattttaacaaatttttcaagtccttttaatattgttataacactgtcagagcaat |
309 |
Q |
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| T |
41176153 |
cttgaaggattttattttaacaaatttttcaagtccttttaatattgttataacactgtcagagcaat |
41176086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 41176100 - 41176015
Alignment:
| Q |
341 |
cactgtcagagcaataatatataaaatcataagcattattcttc-tctctcaaacaatgtgaaaaattctctccatctctgctcctc |
426 |
Q |
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| T |
41176100 |
cactgtcagagcaataatatataaa-tcataagcattattcttcctctcccaaacaatgtgaaaaattctctccatttctgttcctc |
41176015 |
T |
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