View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13904_low_8 (Length: 416)

Name: NF13904_low_8
Description: NF13904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13904_low_8
NF13904_low_8
[»] chr7 (5 HSPs)
chr7 (21-410)||(21579467-21579854)
chr7 (329-410)||(17977454-17977535)
chr7 (329-407)||(17971871-17971949)
chr7 (327-392)||(1881889-1881954)
chr7 (326-410)||(19307543-19307627)
[»] chr8 (1 HSPs)
chr8 (229-410)||(32026165-32026346)
[»] chr5 (2 HSPs)
chr5 (275-409)||(35933397-35933531)
chr5 (246-306)||(9464417-9464477)
[»] chr1 (1 HSPs)
chr1 (331-408)||(7043859-7043936)
[»] chr4 (1 HSPs)
chr4 (329-410)||(15465471-15465552)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 21 - 410
Target Start/End: Complemental strand, 21579854 - 21579467
Alignment:
Q  21 agctaccttaatcaatttcattgccgtcatcttatagtttaaaaccttaacttcaaaatacatgaaattaaggggaaaacaaagatnnnnnnnnnnnnnn 120  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||                  
T  21579854 agctaccttaatcaatttcattgccatcatcttatagtataaaatcataacttcaaaatacatgaaattaaggggaaaacaaagataaaaaaaaaa---- 21579759  T
Q  121 nttcaatt-atttggtggatgtagaaaaattaaatcata--gctcatgaaatattctagcatatatcgtacaattattttttctggtgcaaggactcgtt 217  Q
     | ||||| |||||||| ||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21579758 -tacaatttatttggtgcatgtagacaaactaaatcatacagctcatgaaatattctagcatatatcgtacaattattttttctggtgcaaggactcatt 21579660  T
Q  218 catctcaagatcggatccttacacattctcctttacaacacttaatattatattgtggaacttttcgacaatctttatctgttacacaaggaccaatatt 317  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  21579659 catctcaagatcggatccttacacattctccattacgacacttaatattatattgtggaacttttcgacgatctttatcttttacacaaggaccaatatt 21579560  T
Q  318 aacgtaaggaatagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccatatt 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||||||    
T  21579559 aacgtaaggaatagaatcagatactcttataacaagaaacatggaactaaataaaattagaacataaagaaacttcatagttttagccatatt 21579467  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 410
Target Start/End: Complemental strand, 17977535 - 17977454
Alignment:
Q  329 tagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccatatt 410  Q
    |||||||||||||| |||  |||||||| ||||||  |||||||||||  || |||| |||||||| |||||||||||||||    
T  17977535 tagaatcatatactgttaggacaagaaatatggaaataaatagaatcactacataaacaaactttaaagttttagccatatt 17977454  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 17971949 - 17971871
Alignment:
Q  329 tagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccat 407  Q
    |||||||||||||  |||  |||||||| ||||||  |||||||||||  || |||| |||||||| ||||||||||||    
T  17971949 tagaatcatatacagttaggacaagaaatatggaaataaatagaatcactacataaacaaactttaaagttttagccat 17971871  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 1881889 - 1881954
Alignment:
Q  327 aatagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactt 392  Q
    |||||||||| ||||| ||| |||| |||| ||||||  ||||||||||||||| |||| ||||||    
T  1881889 aatagaatcacatactattacaacatgaaatatggaaataaatagaatcagaacataaacaaactt 1881954  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 19307627 - 19307543
Alignment:
Q  326 gaatagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccatatt 410  Q
    ||||||||||| ||||| |||| |||||||| | ||||  ||||||||| ||||  |||| |||||| ||||||| | |||||||    
T  19307627 gaatagaatcacatactattatgacaagaaataaggaaagaaatagaattagaatataaacaaacttcatagtttcatccatatt 19307543  T

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Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 32026165 - 32026346
Alignment:
Q  229 cggatccttacacattctcctttacaacacttaatattatattgtggaacttttcgacaatctttatctgttacacaaggaccaatattaacgtaaggaa 328  Q
    ||||||||| ||||||  ||||||| |||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  32026165 cggatccttgcacattgacctttacgacacctaatattatattgcgaaacttttggacaatctttatctgttacacaaggaccagaattaacgtaaggaa 32026264  T
Q  329 tagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccatatt 410  Q
    |||| ||||| || |||  ||||| ||| ||||||  ||||| ||| ||||| ||||||||||| |||||||||| ||||||    
T  32026265 tagagtcatagacacttgcaacaacaaatatggaaataaatataattagaacataaagaaacttcatagttttagtcatatt 32026346  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 35933531 - 35933397
Alignment:
Q  275 gaacttttcgacaatctttatctgttacacaaggaccaatattaacgtaaggaatagaatcatatactcttataacaagaaacatggaaccaaatagaat 374  Q
    |||||||| |||||||||||||||||  |||   |  | || ||| ||||||| |||||| | ||| | ||||||||||||| |||||   |||||||||    
T  35933531 gaacttttggacaatctttatctgttttacacaaaatattaataatgtaaggattagaattagatattgttataacaagaaatatggataaaaatagaat 35933432  T
Q  375 cagaacctaaagaaactttatagttttagccatat 409  Q
    || ||| |||| |||||||| ||||| ||||||||    
T  35933431 cataacgtaaacaaactttaaagtttcagccatat 35933397  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 9464477 - 9464417
Alignment:
Q  246 tcctttacaacacttaatattatattgtggaacttttcgacaatctttatctgttacacaa 306  Q
    |||||||| |||| |||||||||||| |  || |||| ||||||||||||| |||||||||    
T  9464477 tcctttacgacacctaatattatattttttaaattttggacaatctttatccgttacacaa 9464417  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 7043859 - 7043936
Alignment:
Q  331 gaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccata 408  Q
    |||||||||||| |||| ||||||||| | |||  ||||| ||||||||| |||| |||||||| ||||| |||||||    
T  7043859 gaatcatatactattatgacaagaaacgtagaaataaataaaatcagaacataaacaaactttagagtttcagccata 7043936  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 15465471 - 15465552
Alignment:
Q  329 tagaatcatatactcttataacaagaaacatggaaccaaatagaatcagaacctaaagaaactttatagttttagccatatt 410  Q
    |||||||| ||||| |||| |||||||| ||||||  ||  ||||||||||| |||| |||||| | ||||| |||||||||    
T  15465471 tagaatcacatactattatgacaagaaatatggaaataagcagaatcagaacataaacaaacttcagagtttcagccatatt 15465552  T

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