View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13905_high_1 (Length: 769)
Name: NF13905_high_1
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 706; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 17 - 762
Target Start/End: Original strand, 11747640 - 11748385
Alignment:
| Q |
17 |
atatagtttcatgattcatgtatatcaaatcttaagactttcaaaaatacatataattaactttgttttaatttataataatgtacattttaaccaggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747640 |
atatagtttcatgattcatgtatatcaaatcttaagactttcaaaaatacatataattaactttgttttaatttataataatgtacattttaaccaggtt |
11747739 |
T |
|
| Q |
117 |
tttaaatcagtctagctgaacacgtaaacctttaaggttgacttgccaagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747740 |
tttaaatcagtctagctgaacacgtaaacctttaaggttgacttgccaagaaaataaatgtcttgagcttaactcatttatttgaacgagcttaacttaa |
11747839 |
T |
|
| Q |
217 |
attatgctttgacttgtttaaaactaggaaaacatggacttcatttgttaaccttatatacatgttgannnnnnnncacaatatacatagtttgctctta |
316 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11747840 |
agtatgctttgacttgtttaaaactagtaaaacatggacttcatttgttaaccttatatacatgttgattttttttcacaatatacatagtttgctctta |
11747939 |
T |
|
| Q |
317 |
aataaaatcaattaattgaatctttatacttttgtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11747940 |
aataaaatcaattaattgaatctttatacttttgtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagc |
11748039 |
T |
|
| Q |
417 |
ctcgagaactatttacagaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11748040 |
ctcgagaactatttacagaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcat |
11748139 |
T |
|
| Q |
517 |
cacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgttt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11748140 |
cacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgttt |
11748239 |
T |
|
| Q |
617 |
ataatagcagatgcaatatctcttttcacttcttcaacttcagtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11748240 |
ataatagcagatgcaatatctcttttcacttcttcaacttcagtccttctcttcattggaattctcacagcgcgttatgctgaaaaggatttcctcaagt |
11748339 |
T |
|
| Q |
717 |
cattaccactcaggttgcttttcggcctcattgcactgttcatctc |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11748340 |
cattaccactcaggttgcttttcggcctcattgcactgttcttctc |
11748385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 347 - 740
Target Start/End: Complemental strand, 11882596 - 11882203
Alignment:
| Q |
347 |
tttgtgtaggcagtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaagg |
446 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
11882596 |
tttgtgtaggcagtggaggaaattgtgcaccccaagtgtaaggaagcaaaaaatgctgacgataagaagcctcgtgagctatttacagaaggccacaagg |
11882497 |
T |
|
| Q |
447 |
agctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcac |
546 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11882496 |
agctggtgaaagccggagagaaatgggcaaaagatacagctggttcatttactcttgttgctacactcatcacaaccatcatgtttgctgcagctttcac |
11882397 |
T |
|
| Q |
547 |
tgtccctggtggaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcact |
646 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| | |||||||| |||| |||||| ||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
11882396 |
tgtccctggtggaaacaatcaagacaatggagttcccttgttcttgcacgacatcacatttgatgcgtttattatagcagatgcagcatctcttttcact |
11882297 |
T |
|
| Q |
647 |
tcttcaacttcagtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtcattaccactcaggttgcttttcg |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || || ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
11882296 |
tcttcaacttcagtccttctcttcattggaatcctaacggctcgttacgctgaaaaagacttcctcaagtcattgccactaaggttacttttcg |
11882203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 358 - 745
Target Start/End: Complemental strand, 11790756 - 11790369
Alignment:
| Q |
358 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
457 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
11790756 |
agtggagaaaattgtgcaccccaaatgtaaggaagccaaaaattcagaagataagaagcctcatgagatatttacagaaagccacaaggagctagtgaaa |
11790657 |
T |
|
| Q |
458 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
557 |
Q |
| |
|
|| || || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11790656 |
gccggtgaaaaatgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11790557 |
T |
|
| Q |
558 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
657 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11790556 |
gaaacaatcaagacagtggaattcccttgttcttacatgactacacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
11790457 |
T |
|
| Q |
658 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtcattaccactcaggttgcttttcggcctc |
745 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| || ||||||||| | ||||| || ||||| | ||| || ||||||||| |
|
|
| T |
11790456 |
agtccttctcttcattggaatccttacggcgcgttatgcagagaaggatttcttaaagtctttgccacttaagttactcttcggcctc |
11790369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 358 - 717
Target Start/End: Complemental strand, 11834973 - 11834614
Alignment:
| Q |
358 |
agtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaa |
457 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| || || ||||||||||||| ||||||||||| |||||| |
|
|
| T |
11834973 |
agtggagaaaatcgtgcaccccaagtgtaaggaagccaaaaacgtagaagataagaagccccgtgagatatttacagaaagtcacaaggagctagtgaaa |
11834874 |
T |
|
| Q |
458 |
gctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
557 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11834873 |
gctggagaaaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtg |
11834774 |
T |
|
| Q |
558 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11834773 |
gaaacaatcaagacagtggaattcccctcttcttgaaggacaaaacatttaatgtttttataatagcagatgcaatatctcttttcacttcctcaacttc |
11834674 |
T |
|
| Q |
658 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
717 |
Q |
| |
|
| |||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||| |
|
|
| T |
11834673 |
aatcctcctcttcattggaattctaacggcacgttatgcagaaaaggatttcctaaagtc |
11834614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 469 - 717
Target Start/End: Complemental strand, 11754504 - 11754256
Alignment:
| Q |
469 |
atgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaa |
568 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11754504 |
atgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatcaa |
11754405 |
T |
|
| Q |
569 |
gacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttcagtccttctct |
668 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11754404 |
gacagtggaattcccctcttcttaaaggacaaaatgtttaatgtgtttataatagcagatgcaatatctcttttcacttcatcaacttcagtccttctct |
11754305 |
T |
|
| Q |
669 |
tcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
717 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
11754304 |
tcattggaattctcacagcgcgttttgcagaaaaggatttcctaaagtc |
11754256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 359 - 717
Target Start/End: Complemental strand, 11751503 - 11751156
Alignment:
| Q |
359 |
gtggagaaaattgtgcatcccaagtgtaaggaagcaaaaaattcagacgataagaagcctcgagaactatttacagaaagccacaaggagctggtgaaag |
458 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||| ||||| ||| || || |||||||| || ||||||| |||||||||| |||||| | ||||| |
|
|
| T |
11751503 |
gtggagaaaattgtgcaccctaagcgtaaggaagccaaaaacgtagaagagaaaaagcctcgtgagatatttaccgaaagccacagggagctagcgaaag |
11751404 |
T |
|
| Q |
459 |
ctggag-agaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtg |
557 |
Q |
| |
|
| || | | |||||||||||||| |||||||||| |||| || |||||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
11751403 |
cagggggaaaaatgggcaaaaga------------atttacacttattgcaactctcatcactactatcatgtttgctgcagctttcacagtccctggtg |
11751316 |
T |
|
| Q |
558 |
gaaacaatcaagacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttc |
657 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| | ||| | |||||||||||| || |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
11751315 |
gaaaaaatcaagacagtggaattcctatcttcttgcaaggcaaaatatttaatgtgttcatcatagcagatgcaatttctcttttcacttctgcaacttc |
11751216 |
T |
|
| Q |
658 |
agtccttctcttcattggaattctcacagcgcgttatgccgaaaaggatttcctcaagtc |
717 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| ||||||||| |||||||| ||||| |
|
|
| T |
11751215 |
agtcattctcttcattggaattctcacagggagttttgccgaaaatgatttcctaaagtc |
11751156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 434 - 561
Target Start/End: Complemental strand, 12008795 - 12008668
Alignment:
| Q |
434 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcg |
533 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||||||| ||||| || | |||| |||| | ||||||||||| ||||||||||| | |
|
|
| T |
12008795 |
gaaagccacgaggagctagtgaaagaaggagagaaatgggcaaaagacacagcaacatcttatacaattgtgggaacactcatcactaccatcatgtttg |
12008696 |
T |
|
| Q |
534 |
ctgcagctttcactgtccctggtggaaa |
561 |
Q |
| |
|
||||||| || || ||||| |||||||| |
|
|
| T |
12008695 |
ctgcagcctttacggtcccaggtggaaa |
12008668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 12090959 - 12090906
Alignment:
| Q |
434 |
gaaagccacaaggagctggtgaaagctggagagaaatgggcaaaagatacagct |
487 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
12090959 |
gaaagccatgaggagctagtgaaagctggagaaaaatggacaaaagacacagct |
12090906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 567
Target Start/End: Original strand, 6106081 - 6106180
Alignment:
| Q |
468 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
567 |
Q |
| |
|
||||||||||||||| ||| |||| || ||| |||| | ||| ||||||| ||||||||||| ||||||||||||||||| || || ||||||||||| |
|
|
| T |
6106081 |
aatgggcaaaagatatagcaagttctttcacaattgtgggtactctcatcattaccatcatgtttgctgcagctttcactgttccaggaggaaacaatca |
6106180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 6129822 - 6129722
Alignment:
| Q |
468 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
567 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| ||||||||||| || || ||||||||||| || || ||||||||||| |
|
|
| T |
6129822 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
6129723 |
T |
|
| Q |
568 |
a |
568 |
Q |
| |
|
| |
|
|
| T |
6129722 |
a |
6129722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 570
Target Start/End: Complemental strand, 6858690 - 6858641
Alignment:
| Q |
521 |
accatcatgttcgctgcagctttcactgtccctggtggaaacaatcaaga |
570 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||||||||||||| |
|
|
| T |
6858690 |
accatcatgtttgctgcagctttcactgttccaggaggaaacaatcaaga |
6858641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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