View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_high_13 (Length: 294)
Name: NF13905_high_13
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 36743244 - 36742970
Alignment:
| Q |
18 |
aaatatatataatgtaataagcatataatgaaaagacatatatagaggagagattatatgtgtaagtattattattactgtcagttttggtggcactgat |
117 |
Q |
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| T |
36743244 |
aaatatatataatgtaataagcatataatgaaaagacatatatagaggagagattatatgtgtaagtattattattactgtcagttttggtggcactgat |
36743145 |
T |
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| Q |
118 |
caactggaggccaacactacggcctaagatagcagtagcaccatcaatgacaccaccaacaacgtctctaacaagaccaaatccagctccaagtgaaggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743144 |
caactggaggccaacactacggcctaagatagcagtagcaccatcaatgacaccaccaacaacgtctctaacaagaccaaatccagctccaagtgaaggg |
36743045 |
T |
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| Q |
218 |
ccagctttaatatcattcaaatccaatgcattcttgcacatcaacaccactgttcccttaatcctttgcttcttc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36743044 |
ccagctttaatatcattcaaatccaatgcattcttgcacatcaacaccactgttcccttaatcttttgcttcttc |
36742970 |
T |
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