View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_high_4 (Length: 471)
Name: NF13905_high_4
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_high_4 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 238 - 471
Target Start/End: Complemental strand, 53463363 - 53463121
Alignment:
| Q |
238 |
agacctaagatgttctattagcccaatttccttaagtaatcaataattgtaataaagttttaatattttttaca---------tatttatataatatacc |
328 |
Q |
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| T |
53463363 |
agacctaagatgttctattagcccaatttccttaagtaatcaataattgtaataaagttttaatattttttacaatttttatatatttatataatatacc |
53463264 |
T |
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| Q |
329 |
acaatttcaactattagattttctaatctaaacttaataatttagtacattatcttctaatgcatatagctgacttcaaatctcttttaagataagaatt |
428 |
Q |
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| T |
53463263 |
acaatttcaactattagattttctaatctaaacttaataatttagtacattatcttctaatgcatatagctgacttcaaatctcttttaagataagaatt |
53463164 |
T |
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| Q |
429 |
aatctatccaatagtctttttagagaaatgatatttgtacaac |
471 |
Q |
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|||||||| | |||| ||||||||||||||||||||||||||| |
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| T |
53463163 |
aatctatcaagtagtatttttagagaaatgatatttgtacaac |
53463121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 53463648 - 53463426
Alignment:
| Q |
18 |
acttaaaaggtacttttttcaatgaaatgctctaccaaaggagtaattaggttagtcccgtaactatatgaaagaacatttgatatattagtgtatgagt |
117 |
Q |
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| T |
53463648 |
acttaaaaggtacttttttcaatgaaatgctctaccaaaggagtaattaggttagtcccgtaactatatgaaagaacatttgatatattagtgtatgagt |
53463549 |
T |
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| Q |
118 |
tcaaacctacctttgcacagttctcaacatttcatgtgtataaatttcgttactctttgttgccnnnnnnnnngatcaataaggttttaattttctttaa |
217 |
Q |
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| T |
53463548 |
tcaaacctacctttgcacagttctcaacatttcatgtggataaatttcgttactctttgttaccaaaaaaaaagatcaataaggttttaattttctttaa |
53463449 |
T |
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| Q |
218 |
agaaatatatattttttacaaga |
240 |
Q |
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| T |
53463448 |
agaaatatatattttttacaaga |
53463426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 471
Target Start/End: Original strand, 48202 - 48230
Alignment:
| Q |
443 |
tctttttagagaaatgatatttgtacaac |
471 |
Q |
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| T |
48202 |
tctttttagagaaatgatatttgtacaac |
48230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 471
Target Start/End: Original strand, 18695310 - 18695338
Alignment:
| Q |
443 |
tctttttagagaaatgatatttgtacaac |
471 |
Q |
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| T |
18695310 |
tctttttagagaaatgatatttgtacaac |
18695338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 471
Target Start/End: Complemental strand, 8577581 - 8577553
Alignment:
| Q |
443 |
tctttttagagaaatgatatttgtacaac |
471 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8577581 |
tctttttagagaaatgatatttgtacaac |
8577553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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