View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_high_9 (Length: 401)
Name: NF13905_high_9
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 37789618 - 37789245
Alignment:
| Q |
12 |
gagaagaacatttgctatttaagagaggcaatcgatgagaagggcaagccatggtagcaaaatggaataaaagnnnnnnnntcattgttggctgataaca |
111 |
Q |
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| T |
37789618 |
gagaagaacatttgctatttaagagaggcaagcgatgagaagggcaagccatggtagcaaaatggaataaaagaaaaaaaatcattgttggctgataaca |
37789519 |
T |
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| Q |
112 |
ttttcgtgttgggttataatcatatcgtaatgtgatttgaaatgtttcaataaagtatgttaatttattctctttgcggtgcgttgtttgtgttcataaa |
211 |
Q |
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| T |
37789518 |
ttttcgtgttgggttataatcatatcgtaatgtgatttgaaatgtttcaataaagtatgttaatttattctctttgcggtgcgttgtttgtgttcataaa |
37789419 |
T |
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| Q |
212 |
taattcatggcttgtacggcttttttacaacaattaagatatgattttgccatgatagtgttgataagttgatacctattacccagtttttcatgaagtt |
311 |
Q |
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| T |
37789418 |
taattcatggcttgtacggcttttttacaacaattaagatatgattttgccatgatagtgttgataagttgatacctattacccagtttttcatgaagtt |
37789319 |
T |
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| Q |
312 |
tgatgataagctcttcctcttgttgattaaagttccctcttttgacatctggccttagatagttcatccacctt |
385 |
Q |
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| T |
37789318 |
tgatgataagctcttcctcttgttgattgaagttccctcttttgacatctggccttagatagttcatccacctt |
37789245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 37808008 - 37807907
Alignment:
| Q |
284 |
tacctattacccagtttttcatgaagtttgatgataagctcttcctcttgttgattaaagttccctcttttgacatctggccttagatagttcatccacc |
383 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
37808008 |
tacctattacccaatttttcatgaagtttgatgatagtctcttcttcttcatgactaaagctccctcttttgatatctggccttagatagttcaaccacc |
37807909 |
T |
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| Q |
384 |
tt |
385 |
Q |
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|| |
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| T |
37807908 |
tt |
37807907 |
T |
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