View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_low_13 (Length: 303)
Name: NF13905_low_13
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 18036165 - 18036458
Alignment:
| Q |
1 |
atccagttatttcgtattgttagtttgtgatccatgctttaataggtaataccaatggaaaagtttctttattgataaatagaatcaatttataacttgt |
100 |
Q |
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| T |
18036165 |
atccagttatttcctattgttagtttgtgatccatgctttaataggtaataccaatggaaaagtttctttattgataaatagaatcaatttataatttgt |
18036264 |
T |
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| Q |
101 |
tctttttgaaagaaaaatcaaattgtatctaagttttgtgaatgaataaaaatccatatttgtttaaatgattagccttgattatgagttcatttcaaga |
200 |
Q |
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| T |
18036265 |
tctttttgaaagaaaaatcaaattgtatctaagttttgtgaatgaataaaaatccatatttgtttaaatgattagccttgattatgagttcatttcaaga |
18036364 |
T |
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| Q |
201 |
tatttataaatgatgagttttatgtaactatggccttttgagaatcaaatttgaaaacagtgttttctactctgtttgaaatcgttgtaatatt |
294 |
Q |
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| T |
18036365 |
tatttataaatgatgagttttatgtgactatggccttttgataatcaaatttgacaacagtgttttctactctgtttgaaatcgttgtaatatt |
18036458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 18021677 - 18021963
Alignment:
| Q |
5 |
agttatttcgtattgttagtttgtgatccatgctttaataggtaataccaatggaaaagtttctttattgataaatagaatcaatttataacttgttctt |
104 |
Q |
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| T |
18021677 |
agttatttcctattgttagtttgtgatccatgctt--ataggtaataccaatggaaaagtgtctttattgataaatagaatcattttataatttgtactt |
18021774 |
T |
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| Q |
105 |
tttgaaagaaaaatcaaattgtatctaagttttgtgaatgaataaaaatccatatttgtttaaatgattagccttgattatgagttcatttcaagatatt |
204 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18021775 |
tttgcaagaaaaatcaaattgtatctaaattttgtgaaagaataaaaatccttaattgtttaaatgattagccttgattatgagttgatttcaagatatc |
18021874 |
T |
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| Q |
205 |
tataaatgatgagttttatgtaactatggccttttgagaatcaaatttgaaaacagtgttttctactctgtttgaaatcgttgtaatatt |
294 |
Q |
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| T |
18021875 |
tataaatgatgagttttatgtaactatggccttttgagaatcaaatttg-aaacaatgtattctactttatttgaaatcgttctaatatt |
18021963 |
T |
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