View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13905_low_17 (Length: 240)
Name: NF13905_low_17
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_low_17 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 38487436 - 38487215
Alignment:
| Q |
19 |
agtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgctttcacaaaatggcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38487436 |
agtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgctttcacaaaatggcta |
38487337 |
T |
|
| Q |
119 |
cgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacctccgtgcaggatagtccgcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38487336 |
cgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacctccgtgcaggatagtccgcc |
38487237 |
T |
|
| Q |
219 |
caaagaaatggctacgtgtacc |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38487236 |
caaagaaatggctacgtgtacc |
38487215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 3686579 - 3686457
Alignment:
| Q |
107 |
acaaaatggctacgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacctccgtgca |
206 |
Q |
| |
|
||||||||||| | |||||| || | |||||| || ||||||||||||||||| || |||||||| ||||||||||||| || || ||||| || || | |
|
|
| T |
3686579 |
acaaaatggcttctagcatatagccgatagttctcagcaaaactcttgtgctccaccacaaaaccgcgacctgtggctctgtacttagcaccaccatgaa |
3686480 |
T |
|
| Q |
207 |
ggatagtccgcccaaagaaatgg |
229 |
Q |
| |
|
| |||||||| |||||||||||| |
|
|
| T |
3686479 |
gtatagtccgaccaaagaaatgg |
3686457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 30121834 - 30121626
Alignment:
| Q |
20 |
gtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgctttcacaaaatggctac |
119 |
Q |
| |
|
|||| ||||| ||||||| |||| | |||| ||||| |||||||| || ||||||||| | ||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
30121834 |
gtcagggctatataaacaaatgtgtccgttgctacaggactgtgtgttgcataaattacaagtattagccccaattcaatagctttcacaaaatggctac |
30121735 |
T |
|
| Q |
120 |
gagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacctccgtgcaggatagtccgccc |
219 |
Q |
| |
|
| | | ||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |||||||| || |
|
|
| T |
30121734 |
gggaaaagagtctatagatttcggcaaaactcttgtgctctacaacaaaaccacggccggtggctcgatattttgctccaccgtgcagaatagtccggcc |
30121635 |
T |
|
| Q |
220 |
aaagaaatg |
228 |
Q |
| |
|
||| ||||| |
|
|
| T |
30121634 |
aaaaaaatg |
30121626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University