View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13905_low_18 (Length: 228)

Name: NF13905_low_18
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13905_low_18
NF13905_low_18
[»] chr1 (3 HSPs)
chr1 (45-213)||(15885621-15885789)
chr1 (45-213)||(12610078-12610246)
chr1 (46-213)||(12637175-12637339)
[»] scaffold0059 (1 HSPs)
scaffold0059 (45-142)||(62326-62423)
[»] chr6 (1 HSPs)
chr6 (46-143)||(21779987-21780084)
[»] chr3 (3 HSPs)
chr3 (60-143)||(23039229-23039312)
chr3 (46-143)||(23146094-23146191)
chr3 (46-143)||(23148932-23149029)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 15885789 - 15885621
Alignment:
Q  45 ctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatta 144  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||| ||||||    
T  15885789 ctcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcatta 15885690  T
Q  145 agaaagttctcatcaacaactccttttgcgttgaacatttctctaacttcagtttgtgctttcttcatc 213  Q
    | | |||||||| |||||| |||||||| ||||||||||||||| ||||||  ||||||||||||||||    
T  15885689 atatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatc 15885621  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 12610078 - 12610246
Alignment:
Q  45 ctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatta 144  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| |||||| |||||  ||||||||||     
T  12610078 ctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcattt 12610177  T
Q  145 agaaagttctcatcaacaactccttttgcgttgaacatttctctaacttcagtttgtgctttcttcatc 213  Q
    | | | || || ||||||  ||||||   |||||| || ||||| || |||  ||||||||||||||||    
T  12610178 atacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatc 12610246  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 12637175 - 12637339
Alignment:
Q  46 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcattaa 145  Q
    ||||||||||||  |||||||||   || ||||||||||| |||||||||||||||||  ||||||||||| | | |||||||||||| ||||||||| |    
T  12637175 tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta 12637271  T
Q  146 gaaagttctcatcaacaactccttttgcgttgaacatttctctaacttcagtttgtgctttcttcatc 213  Q
     | |||| ||| |||||  ||||||   |||||| |||| ||| ||||||  ||||||||||||||||    
T  12637272 tatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 12637339  T

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Target: scaffold0059 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 62326 - 62423
Alignment:
Q  45 ctcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcat 142  Q
    ||||||||||| | ||||||||||||||| |||||||| | |||| ||||||||||| |  ||||||||||||||||||||||  |||||||||||||    
T  62326 ctcacatgcttctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcat 62423  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 21779987 - 21780084
Alignment:
Q  46 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 143  Q
    |||||||||||  |||||||||| || |  |||||||| ||||||||||||| |||||| || ||||| |||| ||| |||||||| |||||||||||    
T  21779987 tcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcatt 21780084  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 23039229 - 23039312
Alignment:
Q  60 acattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 143  Q
    |||||||||||| |  |||||||| | ||||||||||||||| |  || ||||| |||| |||||||||||| |||||||||||    
T  23039229 acattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcatt 23039312  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 23146094 - 23146191
Alignment:
Q  46 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 143  Q
    |||||| ||||  |||||||||| || |  |||||||| ||||||||||||| |||||| || ||||| |||| | | |||||||| |||||||||||    
T  23146094 tcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcatt 23146191  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 23148932 - 23149029
Alignment:
Q  46 tcacatgcttgtgtacattctcttggaactaaaagaggagctggagggtgtaaccttaacgtctctttcacaattgacttcaaatatttgagttcatt 143  Q
    ||||| |||||  |||||||||| || |  |||||||| || |||||||||| |||||| || ||||| |||| | | |||||||| |||||||||||    
T  23148932 tcacacgcttgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcatt 23149029  T

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