View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_low_2 (Length: 712)
Name: NF13905_low_2
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 36878918 - 36879232
Alignment:
| Q |
1 |
cctcatttaagcattacagaaactgaagctggaaagaccagcaagcagattaacaagatcttatcgggatctcttttgtgtgtttcaggtatatcagttt |
100 |
Q |
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| T |
36878918 |
cctcatttaagcattccagaaactgaagctggaaagacccgcaagcagattaacaagatcttatcgcgatctcttttgtgtgtttcaggtatgtcagttt |
36879017 |
T |
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| Q |
101 |
tcagattgatttgttagtagttcattaatttccatttaacttcgtatgttaaagctgttcaatcttgtatgctaactaatcaaattagcctatttaacct |
200 |
Q |
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| T |
36879018 |
tcagattgatttgttagttgttcattaatttccatttaacttcatatgttaaagctgttcagtcttgtatgctaactaataaaattagcctatttaacct |
36879117 |
T |
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| Q |
201 |
actgaaattttgggtgacatggtttaatttgtttgtgtgtcctctcttttggtttcatagttcattttaattttgcaatgatttgtcacttataaccttg |
300 |
Q |
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| T |
36879118 |
acttaaattttgggtgacatggtttaatttgttcgtgtgttctctcttttggtttcatagttcattttgattttgcaatgatttgtcacttataaccttg |
36879217 |
T |
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| Q |
301 |
aggtgttatgcaact |
315 |
Q |
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| T |
36879218 |
aggtgttatgcaact |
36879232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 36880179 - 36880246
Alignment:
| Q |
338 |
aatttcaatttttgcaaatgtgtgcttcactttcactatgaacacactaatttccagttgctcactct |
405 |
Q |
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| T |
36880179 |
aatttcaatttttgcaaatgtgtgcttcactttcactatgaacacactaaattccagttgctcactct |
36880246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 15014052 - 15013975
Alignment:
| Q |
237 |
gtgtcctctcttttggtttcatagttcattttaattttgcaatgatttgtcacttataaccttgaggtgttatgcaact |
315 |
Q |
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| T |
15014052 |
gtgttctctcttttggttttatact-cattttgattttccaatggtttgtcacttataaccttgaggtgttaagcaact |
15013975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 14772106 - 14772009
Alignment:
| Q |
68 |
gatctcttttgtgtgtttcaggtatatcagttttcagattgatttgttagtagttcattaatttccatttaacttcgtatgttaaagctgttcaatct |
165 |
Q |
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| T |
14772106 |
gatctcttatgtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttgttaaatct |
14772009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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