View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13905_low_3 (Length: 710)

Name: NF13905_low_3
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13905_low_3
NF13905_low_3
[»] chr3 (14 HSPs)
chr3 (19-703)||(44816-45500)
chr3 (19-56)||(21552648-21552685)
chr3 (19-60)||(52741598-52741639)
chr3 (19-60)||(53785689-53785730)
chr3 (19-59)||(32546775-32546815)
chr3 (19-56)||(26856852-26856889)
chr3 (19-60)||(37133085-37133126)
chr3 (19-60)||(44198747-44198788)
chr3 (19-60)||(51234596-51234637)
chr3 (19-55)||(13582490-13582526)
chr3 (19-63)||(38978882-38978926)
chr3 (21-60)||(3443398-3443437)
chr3 (19-54)||(52411983-52412018)
chr3 (21-55)||(5338625-5338659)
[»] chr1 (10 HSPs)
chr1 (79-693)||(21358326-21358933)
chr1 (19-60)||(21472983-21473024)
chr1 (19-60)||(20259883-20259924)
chr1 (19-60)||(28041213-28041254)
chr1 (19-60)||(2898682-2898723)
chr1 (19-60)||(22346875-22346916)
chr1 (19-60)||(24177597-24177638)
chr1 (19-60)||(31737409-31737450)
chr1 (19-55)||(4862080-4862116)
chr1 (20-60)||(29169879-29169919)
[»] scaffold0490 (1 HSPs)
scaffold0490 (19-60)||(6314-6355)
[»] chr8 (10 HSPs)
chr8 (19-60)||(37514201-37514242)
chr8 (19-60)||(18804592-18804633)
chr8 (19-60)||(40223489-40223530)
chr8 (19-60)||(6592555-6592596)
chr8 (19-60)||(38815274-38815315)
chr8 (19-55)||(500208-500244)
chr8 (19-55)||(35740077-35740113)
chr8 (19-60)||(3821204-3821245)
chr8 (19-60)||(22589423-22589463)
chr8 (19-60)||(24125008-24125049)
[»] chr6 (6 HSPs)
chr6 (19-60)||(45763-45804)
chr6 (17-60)||(4206682-4206725)
chr6 (17-60)||(4166008-4166051)
chr6 (317-356)||(24745562-24745601)
chr6 (19-58)||(32115698-32115737)
chr6 (19-60)||(28625910-28625951)
[»] chr5 (5 HSPs)
chr5 (19-60)||(22188741-22188782)
chr5 (19-60)||(38875618-38875659)
chr5 (20-60)||(37873724-37873764)
chr5 (31-60)||(34335329-34335358)
chr5 (19-60)||(42921677-42921718)
[»] chr4 (10 HSPs)
chr4 (19-60)||(53170493-53170534)
chr4 (19-60)||(34107782-34107823)
chr4 (22-60)||(600778-600816)
chr4 (22-60)||(50483282-50483320)
chr4 (19-60)||(747855-747896)
chr4 (19-52)||(16955440-16955473)
chr4 (21-60)||(26521470-26521509)
chr4 (17-60)||(56462192-56462235)
chr4 (19-60)||(712679-712720)
chr4 (19-60)||(4419243-4419284)
[»] chr2 (10 HSPs)
chr2 (19-60)||(13413331-13413372)
chr2 (19-60)||(41867994-41868035)
chr2 (19-59)||(17344618-17344658)
chr2 (19-56)||(34814908-34814945)
chr2 (19-55)||(4413157-4413193)
chr2 (20-60)||(16351930-16351970)
chr2 (19-59)||(18745041-18745081)
chr2 (22-60)||(9685501-9685539)
chr2 (30-60)||(32029172-32029202)
chr2 (19-60)||(19161869-19161910)
[»] scaffold0148 (1 HSPs)
scaffold0148 (19-60)||(33230-33271)
[»] chr7 (17 HSPs)
chr7 (19-60)||(19277273-19277314)
chr7 (19-60)||(21326924-21326965)
chr7 (19-60)||(24527569-24527610)
chr7 (19-60)||(27521451-27521492)
chr7 (333-371)||(40432235-40432273)
chr7 (19-60)||(982929-982970)
chr7 (19-60)||(4501239-4501280)
chr7 (19-60)||(5972302-5972343)
chr7 (19-60)||(25187017-25187058)
chr7 (20-60)||(43856855-43856895)
chr7 (619-692)||(18382950-18383024)
chr7 (26-60)||(22197973-22198007)
chr7 (26-60)||(22239814-22239848)
chr7 (22-55)||(9281222-9281255)
chr7 (22-55)||(9292193-9292226)
chr7 (19-60)||(45613928-45613969)
chr7 (19-60)||(48539161-48539202)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-60)||(103086-103127)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 44816 - 45500
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctcaggacaattgttatgaacagtctatataattactaacatgttcaggaaatggtatatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44816 atgcatgaccttttgaactctatgtagaaggtcaacagcctctggacaattgttatgagcagtctatataattactaacatgttcaggaaatggtatatg 44915  T
Q  119 aaatttgatactgattagatgagttttgagccttcaaatgagatactaaagttgcacgctcttttttggaatttctgtgagaactgtttttgtctacaat 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  44916 aaatttgataccgattagatgagttttgagccttcaaatgagatactaaagttgcatgctcttttttggaatttctgtgagaactctttttgtctacaat 45015  T
Q  219 tttatacactattctttgcgcaactaattcaaagtaaaagcacggatttgatgtatgatgtgttaggaatctgtctctattttttattgatattttcatg 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45016 tttatacactattctgtgcgcaactaattcaaagtaaaagcacggatttgatgtatgatgtgttaggaatctgtctctattttttattgatattttcatg 45115  T
Q  319 aaggtttgagtgccaaaagtggtgaacattgtatgatgttcatgctgaacattgttataaaagtcctctgttttgaattttcctagaccttttaatgatc 418  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45116 aaggtttgagtgccaaaagtggtgaacattgtatgatgttcgtgctgaacattgttataaaagtcctctgttttgaattttcctagatcttttaatgatc 45215  T
Q  419 gtttttgataaaataacattacggtgatgattcattatgtgttgctggtttgcaacttttattggattttagatttaacttttggccttaacccatatag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |    
T  45216 gtttttgataaaataacattacggtgatgattcattatgtgttgctggttttcaacttttattggattttagatttaacttctggccttaacccatatgg 45315  T
Q  519 gctgggtcaagtaggttggtcttgaccatactggcgactctaaatgtataacgccaacactttgttgaggagtttaattcagtctcactattgcagcttc 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45316 gctgggtcaagtaggttggtcttgaccatactggcgactctaaatgtataaagccaacactttgttgaggagtttaattcagtctcactattgcagcttc 45415  T
Q  619 taaagcctaaatgcttattgaattccattttgatgtttgatttgaatttctgagaaatagcttgccaatttgaaacctccctttg 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45416 taaagcctaaatgcttattgaattccattttgatgtttgatttgaatttctgagaaatagcctgccaatttgaaacctccctttg 45500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 21552648 - 21552685
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacag 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21552648 atgcatgaccttttgaactctatgtagaaggtcaacag 21552685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 52741639 - 52741598
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  52741639 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 52741598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 53785689 - 53785730
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  53785689 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 53785730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 32546775 - 32546815
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcct 59  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  32546775 atgcatgactttttgaactctatgtagaaggtcaacagcct 32546815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 26856889 - 26856852
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacag 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  26856889 atgcatgaccctttgaactctatgtagaaggtcaacag 26856852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37133126 - 37133085
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  37133126 atgcatgacctttagaactctatgtagaaggtcaacaacctc 37133085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44198747 - 44198788
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  44198747 atgcataaccttctgaactctatgtagaaggtcaacagcctc 44198788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 51234596 - 51234637
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  51234596 atgcataaccttttgaactctatgtagaaggtcaacaacctc 51234637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13582490 - 13582526
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||||||||||||||||| |||||||||||||||    
T  13582490 atgcatgaccttttgaactctctgtagaaggtcaaca 13582526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 38978926 - 38978882
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctcagg 63  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||    
T  38978926 atgcatcaccttttgaactatatgtagaaggtcaacggcctcagg 38978882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 3443437 - 3443398
Alignment:
Q  21 gcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  3443437 gcatgaccctttgaactctatgtagaaggtcaacaacctc 3443398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 52412018 - 52411983
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaac 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  52412018 atgcatgaccctttgaactctatgtagaaggtcaac 52411983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 5338625 - 5338659
Alignment:
Q  21 gcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  5338625 gcatgaccttttgaactctatgtagaatgtcaaca 5338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 1e-80; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 79 - 693
Target Start/End: Original strand, 21358326 - 21358933
Alignment:
Q  79 agtctatataattactaacatgttcaggaaatggtatatgaaatttgatactgattagatgagttttgagccttcaaatgagatactaaagttgcacgct 178  Q
    ||||||||| ||||||||||  || ||   ||||| | || |||| |||| ||||| ||||||||||||||| |||| ||| || ||||||||||| | |    
T  21358326 agtctatatgattactaacaatttgagctgatggtgtgtggaattcgatagtgattggatgagttttgagccctcaactgatatgctaaagttgcatggt 21358425  T
Q  179 cttttttggaatttctgtgagaactgtttttgtctacaattttatacactattctttgcgcaactaattcaaagta-aaagcacggatttgatgtatgat 277  Q
    | || ||  |||||||||||||||||||||||| |  |||||||| |||||| || || |||| ||| |||||||  |||| | ||||||||||| | ||    
T  21358426 cgttgttttaatttctgtgagaactgtttttgtttgaaattttatgcactatactgtgagcaattaaatcaaagtttaaagtaaggatttgatgtctaat 21358525  T
Q  278 gtgttaggaatctgtctctattttt-tattgatattttcatgaaggtttgagtgccaaaagtggtgaacattgtatgatgttcatgctgaacattgttat 376  Q
    || | || ||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||        |||||||||||||||| |  |    
T  21358526 gtat-agaaatctgtgtctatttttgtatcgatgttttcatgaaggtttgagtgccaaaagtagtgaacat--------gttcatgctgaacattttggt 21358616  T
Q  377 aaaagtcctctgttttgaattttcctagaccttttaatgatcgtttttgataaaataacattacggtgatgattcattatgtgttgctggtttgcaactt 476  Q
    |||  |||||| |||  |||||||||||||| ||| ||||| |||| |||| |||||| | |||||||||||||||||| ||||||||||||||| | ||    
T  21358617 aaagatcctctttttcaaattttcctagaccgtttgatgatggtttctgatgaaataaaactacggtgatgattcattacgtgttgctggtttgccattt 21358716  T
Q  477 ttat-tggattttagatttaacttttggccttaacccatataggctgggtcaagtaggttggtcttgaccatactggcgactctaaatgtataacgccaa 575  Q
    || | | | |||||||||||| |||| | | |||||||||| || |||| |||||| ||||| ||| | |||| ||  | |||||||||| ||| |||||    
T  21358717 ttttattgtttttagatttaaatttttggcctaacccatatgggttggggcaagta-gttggacttcatcatattgatggctctaaatgtttaaagccaa 21358815  T
Q  576 cactttgttgaggagtttaattcagtctcactattgcagcttctaaagcctaaatgcttattgaattccattttgatgtttgatttgaatttctgagaaa 675  Q
    ||||||||| |||||||| ||| ||| ||||  |||||| ||  ||||||||||||  |||  || |||||||| ||||||||||||||||| |||||||    
T  21358816 cactttgttaaggagtttcattgagtatcacagttgcagtttacaaagcctaaatgtctatcaaaatccatttttatgtttgatttgaatttttgagaaa 21358915  T
Q  676 tagcttgccaatttgaaa 693  Q
     |||  ||||||||||||    
T  21358916 cagccagccaatttgaaa 21358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 21472983 - 21473024
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21472983 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 21473024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 20259924 - 20259883
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20259924 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 20259883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28041254 - 28041213
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  28041254 atgcatgaccttttgaactctatgtagaaggtcaaccgcctc 28041213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 2898682 - 2898723
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  2898682 atgcatgatcttttgaactctatgtagaaggtcaacaacctc 2898723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 22346875 - 22346916
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  22346875 atgcatgaccttttgaactctgtgtagaaggtcaacaacctc 22346916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 24177638 - 24177597
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  24177638 atgcatgactttttgaactctatgtagaaggtaaacagcctc 24177597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 31737450 - 31737409
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  31737450 atgcatgaccttttgaactctatgtagaatgtcaatagcctc 31737409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 4862116 - 4862080
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4862116 atgcatgaccctttgaactctatgtagaaggtcaaca 4862080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 29169919 - 29169879
Alignment:
Q  20 tgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  29169919 tgcatgaccttttgaactctatgtagaaggttaacaacctc 29169879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 6314 - 6355
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6314 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 6355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37514201 - 37514242
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37514201 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 37514242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18804592 - 18804633
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  18804592 atgcatgaccttttgaaatctatgtagaaggtcaacagcctc 18804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 40223530 - 40223489
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  40223530 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 40223489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 6592555 - 6592596
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  6592555 atgcatgaccttttgaactctatgcagaaggtcaacaacctc 6592596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38815274 - 38815315
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  38815274 atgcatgaccctttgaactctatgtagaaggtcaacaccctc 38815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 500208 - 500244
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||||||||||||||||||||||||||| |||||    
T  500208 atgcatgaccttttgaactctatgtagaaggccaaca 500244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 35740113 - 35740077
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||||| |||||||||||||||||||||||||||    
T  35740113 atgcatgactttttgaactctatgtagaaggtcaaca 35740077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3821204 - 3821245
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||| ||| |||||||||||||||||||||||||| ||||    
T  3821204 atgcattaccctttgaactctatgtagaaggtcaacaacctc 3821245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 22589463 - 22589423
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  22589463 atgcatgaccttttgaactctatgta-aaagtcaacagcctc 22589423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 24125008 - 24125049
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||    
T  24125008 atgcatgaccttttgaactttatgtagaaggccaacaacctc 24125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 45804 - 45763
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45804 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 45763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 4206725 - 4206682
Alignment:
Q  17 tcatgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  4206725 tcatgcatgaccttttgaactctatgtagaaggtcaacaacctc 4206682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 4166051 - 4166008
Alignment:
Q  17 tcatgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    
T  4166051 tcatgcatgaccttttaaactctatgtagaaggtcaacaacctc 4166008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 24745562 - 24745601
Alignment:
Q  317 tgaaggtttgagtgccaaaagtggtgaacattgtatgatg 356  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  24745562 tgaagggttgagtgccaaaagtggtgaacattgtatgatg 24745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 32115698 - 32115737
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcc 58  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32115698 atgcatgaccttttgaactctttgtagaaggtcaacagcc 32115737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28625910 - 28625951
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||| |||||||||| |||||| ||||    
T  28625910 atgcatgaccttttgaactttatgtagaagctcaacaacctc 28625951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 22188782 - 22188741
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22188782 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 22188741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38875618 - 38875659
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  38875618 atgcatgaccttttgaactctacgtagaaggtcagcagcctc 38875659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 37873764 - 37873724
Alignment:
Q  20 tgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  37873764 tgcatgaccctttgaactctatgtagaaggtcaacaacctc 37873724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 34335329 - 34335358
Alignment:
Q  31 ttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||    
T  34335329 ttgaactctatgtagaaggtcaacagcctc 34335358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 42921677 - 42921718
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||| |||||||||||||||||| ||||| ||||    
T  42921677 atgcatgaccttctgaactctatgtagaaggccaacaacctc 42921718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 53170493 - 53170534
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53170493 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 53170534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 34107823 - 34107782
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  34107823 atgcatgactttttgaactctatgtagaaggtcaacagcctc 34107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 600816 - 600778
Alignment:
Q  22 catgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  600816 catgaccttttgaactctatgtagaaggtcaacaacctc 600778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 50483320 - 50483282
Alignment:
Q  22 catgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  50483320 catgaccttttgaactctatgtagaaggtcaacaacctc 50483282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 747896 - 747855
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  747896 atgcatgaccttttaaactctatgtagaaggtcaacaacctc 747855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 16955440 - 16955473
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  16955440 atgcatgaccttttgaactctatgtagaaggtca 16955473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 26521470 - 26521509
Alignment:
Q  21 gcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  26521470 gcatgaccctttgaactgtatgtagaaggtcaacagcctc 26521509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 56462235 - 56462192
Alignment:
Q  17 tcatgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||| | |||||||||||||||||||||||||| ||||    
T  56462235 tcatgcatgatcctttgaactctatgtagaaggtcaacaacctc 56462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 712720 - 712679
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  712720 atgcatgaccttttaaactctatgtagaaggacaacaacctc 712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 4419243 - 4419284
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||| ||| |||||||||||||||||||||||||| ||||    
T  4419243 atgcataaccctttgaactctatgtagaaggtcaacaacctc 4419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 13413331 - 13413372
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13413331 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 13413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 41868035 - 41867994
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41868035 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 41867994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 17344618 - 17344658
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcct 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17344618 atgcatgaccttttgaactctatgtagaaggtcaacagcct 17344658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 34814945 - 34814908
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacag 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34814945 atgcatgaccatttgaactctatgtagaaggtcaacag 34814908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 4413193 - 4413157
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaaca 55  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4413193 atgcatgaccttttgaaccctatgtagaaggtcaaca 4413157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 16351970 - 16351930
Alignment:
Q  20 tgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  16351970 tgcatgaccatttgaactctatgtagaaggtcaacaacctc 16351930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 18745081 - 18745041
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcct 59  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  18745081 atgcatgatcttttgaactctatgtagaaggccaacagcct 18745041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 9685539 - 9685501
Alignment:
Q  22 catgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  9685539 catgaccttttgaactctatatagaaggtccacagcctc 9685501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 32029202 - 32029172
Alignment:
Q  30 tttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||||    
T  32029202 tttgaactctatgtagaaggtcaacagcctc 32029172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 19161910 - 19161869
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||| ||||| | |||||||    
T  19161910 atgcatgaccttttgaactctatgtaaaaggtaagcagcctc 19161869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33230 - 33271
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  33230 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 33271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 19277273 - 19277314
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  19277273 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 19277314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 21326965 - 21326924
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  21326965 atgcatgaccttttgaactctatgtaaaaggtcaacagcctc 21326924  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 24527569 - 24527610
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  24527569 atgcatgaccttttgaactctatgtagaaggtcaaccgcctc 24527610  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 27521451 - 27521492
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  27521451 atgcatgaccttttgaactctatgtagaaggtcaacaacctc 27521492  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 40432273 - 40432235
Alignment:
Q  333 aaaagtggtgaacattgtatgatgttcatgctgaacatt 371  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  40432273 aaaagtggtgaaccttgtatgatgttcatgctgaacatt 40432235  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 982929 - 982970
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  982929 atgcatgaccttttgaactctatgtagaaggccaacaacctc 982970  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 4501239 - 4501280
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  4501239 atgcatgaacttttgaactctatgtagaaggtcaacaacctc 4501280  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 5972343 - 5972302
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  5972343 atgcatgacattttgaactctatgtagaaggtcaacaacctc 5972302  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25187058 - 25187017
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  25187058 atgcatgaccttttgaactctatatagaaggtcaacaacctc 25187017  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 43856855 - 43856895
Alignment:
Q  20 tgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  43856855 tgcatgaccctttgaactctatgtagaaggtcaacaacctc 43856895  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 692
Target Start/End: Complemental strand, 18383024 - 18382950
Alignment:
Q  619 taaagcctaaatgcttattgaattccattttg-atgtttgatttgaatttctgagaaatagcttgccaatttgaa 692  Q
    ||||||||||||| |||||||||| ||||||| | ||||| | |||||||||||| || ||| | ||||||||||    
T  18383024 taaagcctaaatgtttattgaatttcattttgaaggtttggtatgaatttctgagcaagagcctaccaatttgaa 18382950  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 22197973 - 22198007
Alignment:
Q  26 accttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  22197973 accttttgaactctatgtagaaggtcaacaacctc 22198007  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 22239848 - 22239814
Alignment:
Q  26 accttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  22239848 accttttgaactctatgtagaaggtcaacaacctc 22239814  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 9281255 - 9281222
Alignment:
Q  22 catgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||| ||||||||||||||||||||||||||    
T  9281255 catgaccctttgaactctatgtagaaggtcaaca 9281222  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 9292226 - 9292193
Alignment:
Q  22 catgaccttttgaactctatgtagaaggtcaaca 55  Q
    ||||||| ||||||||||||||||||||||||||    
T  9292226 catgaccctttgaactctatgtagaaggtcaaca 9292193  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 45613969 - 45613928
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||| ||||||||||||||||||||||  |||||||||    
T  45613969 atgcatgaacttttgaactctatgtagaaggctaacagcctc 45613928  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48539161 - 48539202
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  48539161 atgcatgaccttttggactctatgtagacgatcaacagcctc 48539202  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 103086 - 103127
Alignment:
Q  19 atgcatgaccttttgaactctatgtagaaggtcaacagcctc 60  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  103086 atgcatgaccttttgagctcgatgtagaaggtcaacagcctc 103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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