View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_low_6 (Length: 462)
Name: NF13905_low_6
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 18035618 - 18035821
Alignment:
| Q |
24 |
gctcttcgtgaactaaaaactcctcgtgagtcgcatacaactaaaagcttcccatgggcatgatcttttccctcgcatcaaacatcaaactcctcaaagt |
123 |
Q |
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| T |
18035618 |
gctcttcgtgaactaaaaactcctcgtgagtcgcatacaactaaaagcttcccatgggaatgatcttttccctcgcataaaacatcaaacttctcaaagt |
18035717 |
T |
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| Q |
124 |
caacactcttcactcatgatgacattgggctactgttatgtactgctcaaaagcctacgttcacaatcccaacaaacaggcacaattccacattagacca |
223 |
Q |
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| T |
18035718 |
caacactcttcactcatgatgactttgggctactgttatggactgctcaaaagcctacgttcacaatcccaacaaacagacacaattccacattagacca |
18035817 |
T |
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| Q |
224 |
acac |
227 |
Q |
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|||| |
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| T |
18035818 |
acac |
18035821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 18036065 - 18036197
Alignment:
| Q |
325 |
cgaatcactcaagaacaacaagctcaccgcaccaggtgtcgttttactgatcaagtgagatcatcactcttttgttgtttgtgtgtatgtgtttgagaga |
424 |
Q |
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| T |
18036065 |
cgaatcactcaagaacaacaagctcaccgcacctggtgtcgttttattgatcaagtgagatcatcactcttttgttgtttgtgtgtatgtgtttaagaga |
18036164 |
T |
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| Q |
425 |
atccagttatttcgtattgttagtctgtgatcc |
457 |
Q |
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| T |
18036165 |
atccagttatttcctattgttagtttgtgatcc |
18036197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 18021575 - 18021705
Alignment:
| Q |
325 |
cgaatcactcaagaacaacaagctcaccgcaccaggtgtcgttttactgatcaagtgagatcatcactcttttgttgtttgtgtgtatgtgtttgagaga |
424 |
Q |
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| T |
18021575 |
cgaatcactcaagaacaacaagctcaccatacaagatgtcgttttactgatcaagtga--tcatcactcttttgttgtttgtgtgtatgtgtttgagaga |
18021672 |
T |
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| Q |
425 |
atccagttatttcgtattgttagtctgtgatcc |
457 |
Q |
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| T |
18021673 |
attaagttatttcctattgttagtttgtgatcc |
18021705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 18035954 - 18036040
Alignment:
| Q |
239 |
aatcatcatcactttgtaacctttgaggttcacgaatcctgttgttcgtaaccgccgaacaatgattctctaccattaaaaacttgc |
325 |
Q |
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| T |
18035954 |
aatcatcatcactttgtaacctttgaggtttacgaatcctgttgttcgtacctgccgaacaatgattctctaccattaaaaacttgc |
18036040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 18021415 - 18021544
Alignment:
| Q |
190 |
tcccaacaaacaggcacaattccacattagaccaacactacttcaccccaatcatcatcactttgtaacctttgaggttcacgaatcctgttgttcgtaa |
289 |
Q |
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|||||||||||| ||||||||||||||| |||||||| | |||| ||||||||||||||||||||||| |||| | |||||||||| ||| |||| |
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| T |
18021415 |
tcccaacaaacaagcacaattccacattggaccaaca--aattca----aatcatcatcactttgtaaccttcgagggttacgaatcctgatgtctgtaa |
18021508 |
T |
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| Q |
290 |
ccgccgaacaatgattctctaccattaaaaacttgc |
325 |
Q |
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| T |
18021509 |
tcatcgaacaatgattctctacctttaaaaacttgc |
18021544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 31328636 - 31328707
Alignment:
| Q |
59 |
tacaactaaaagcttcccatgggcatgatcttttccctcgcatcaaacatcaaactcctcaaagtcaacact |
130 |
Q |
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| T |
31328636 |
tacaacttaaagcttcccacgggcatgatcttttccttagcatggaacatccaacgcctcgaagtcatcact |
31328707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 42448027 - 42448133
Alignment:
| Q |
33 |
gaactaaaaactcctcgtgagtcgcatacaactaaaagcttcccatgggcatgatcttttccctcgcatcaaacatcaaactcctcaaagtcaacactct |
132 |
Q |
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| T |
42448027 |
gaactgaaaagtcatcgtgagtcgcatacaagcaaaagctttctttgagcataatctttgccctcgcatagaacatcaaactgctcaaagtcgtcactct |
42448126 |
T |
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| Q |
133 |
tcactca |
139 |
Q |
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| T |
42448127 |
tcactca |
42448133 |
T |
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