View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13905_low_9 (Length: 416)
Name: NF13905_low_9
Description: NF13905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13905_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 38486830 - 38487233
Alignment:
| Q |
13 |
tgcccgtggaaatggggagcaagtattgagccgagatgtatatagattgggtcatagactggatttcttcaggatgctgtcattcttctacaccacagtg |
112 |
Q |
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| T |
38486830 |
tgccagtggaaatggggagcaagtattgagccgagatgtatatagattgggtcatagactggatttcttcaggatgctgtcattcttctacaccacagtg |
38486929 |
T |
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| Q |
113 |
ggattctttttcaacacaatgatggttgttcttaccgtttatgcatttctgtggggtcgattattgcttgcgcttagtggtattgaagctgctatggaaa |
212 |
Q |
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| T |
38486930 |
ggattctttttcaacacaatgatggttgttcttaccgtttatgcatttctgtggggtcgattattgcttgcgcttagtggtattgaagctgctatggaaa |
38487029 |
T |
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| Q |
213 |
ataacagcaataaaaataaagcacttggtataataatgaatcagcagttcctagtccaaattggacttttcactgcccttccaatgattgtggagaattc |
312 |
Q |
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| T |
38487030 |
ataacagcaataaaaataaagcacttggtataataatgaatcagcagttcctagtccaaattggacttttcactgcccttccaatgattgtggagaattc |
38487129 |
T |
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| Q |
313 |
ccttgaacatggattccttcaagctgtctgggattttttgacaatgcagctccaactttcatcagttttctacacattctccatgggtacacgtagccat |
412 |
Q |
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| T |
38487130 |
ccttgaacatggattccttcaagctgtctgggattttttgacaatgcagctccaactttcatcagttttctacacattctccatgggtacacgtagccat |
38487229 |
T |
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| Q |
413 |
ttct |
416 |
Q |
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| T |
38487230 |
ttct |
38487233 |
T |
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Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 39 - 399
Target Start/End: Original strand, 30121255 - 30121615
Alignment:
| Q |
39 |
tgagccgagatgtatatagattgggtcatagactggatttcttcaggatgctgtcattcttctacaccacagtgggattctttttcaacacaatgatggt |
138 |
Q |
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| T |
30121255 |
tgagcagagatgtgtacaggttgggtcataggcttgattttttccgaatgctttcattcttctacactactgtggggttcttcttcaacacaatgatggt |
30121354 |
T |
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| Q |
139 |
tgttcttaccgtttatgcatttctgtggggtcgattattgcttgcgcttagtggtattgaagctgctatggaaaataacagcaataaaaataaagcactt |
238 |
Q |
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| T |
30121355 |
ggttctgacagtatatgcctttctatggagtcgactatatctcgcccttagtggtgttgagaaatcaatggaaagtaacagcaataacaacaaagcactt |
30121454 |
T |
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| Q |
239 |
ggtataataatgaatcagcagttcctagtccaaattggacttttcactgcccttccaatgattgtggagaattcccttgaacatggattccttcaagctg |
338 |
Q |
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| T |
30121455 |
ggtgccatcttaaatcagcagtttatcatccaacttggacttttcaccgcccttccgatgattgtagagaattcccttgagcacgggttcctccaagcta |
30121554 |
T |
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| Q |
339 |
tctgggattttttgacaatgcagctccaactttcatcagttttctacacattctccatggg |
399 |
Q |
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| T |
30121555 |
tctgggacttcttaacgatgcaacttcagctttcatccgttttctacaccttctccatggg |
30121615 |
T |
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