View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13906_high_2 (Length: 389)
Name: NF13906_high_2
Description: NF13906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13906_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 24 - 389
Target Start/End: Complemental strand, 50707759 - 50707394
Alignment:
| Q |
24 |
cggatggaaacagcacgtcaacaaaacgaagcaactcacggaagagaaccattgaaatcaagaaagcaaagccatcgaacaagcgccgtgataccttttc |
123 |
Q |
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| T |
50707759 |
cggatggaaacaacacgtcaacaaaacgaagcaactcacggaagaaaaccattgaaatcaagaaagcaaagccatcgaacaagcggcgtgataccttttc |
50707660 |
T |
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| Q |
124 |
aaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactgatcatcacttctccaaacaaaaatctccat |
223 |
Q |
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| T |
50707659 |
aaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactgatcatcacttcaccaaacaaaaatctccat |
50707560 |
T |
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| Q |
224 |
gcatgcggataccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacactgaaaaagggaagcaagatgagtacacaa |
323 |
Q |
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| T |
50707559 |
gcatgcggataccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacactgaaaaagggaagcaagatgagtacacaa |
50707460 |
T |
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| Q |
324 |
ttgaaacctcaaggcttcaacatgtgacagttcaagaacggctgaaagaagagaagaataatttac |
389 |
Q |
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| T |
50707459 |
ttgaaacctcaaggcttcaacatgagacaattcaagaacggctgaaagaagagaagaataatttac |
50707394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 70 - 388
Target Start/End: Complemental strand, 8167646 - 8167325
Alignment:
| Q |
70 |
aaccattgaaatcaagaaagcaaagccatcgaacaagcgccgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccatt |
169 |
Q |
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| T |
8167646 |
aaccattaaaatcaagaaagcagaacaatcaaacaagcccctcgataccttctcaaaacgcaaactagggctcttcaacaaagttacagaactatctatc |
8167547 |
T |
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| Q |
170 |
ctatgcaatgcaaaaaccgcactgatcatcacttctccaaacaaaaatctccatgcatgcggataccctaaccatgacactgtcattaaacactttttcg |
269 |
Q |
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| T |
8167546 |
ctatgcaatgcaaaaactgcaatgatcatcacttcaccaaacggaaaactctacgtttgtggttaccctaaccctaacaccgtcattaaacactttctcg |
8167447 |
T |
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| Q |
270 |
ataaggaaaacccagtcatcaacactgaaaaagggaagcaag---atgagtacacaattgaaacctcaaggcttcaacatgtgacagttcaagaacggct |
366 |
Q |
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| T |
8167446 |
atagggaaaacccagtcatcgacgctgacaaaaggaagcaggatcatgagggcgtagttgaaaccttaaggtttcaacatgaggcaattgaagaacggct |
8167347 |
T |
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| Q |
367 |
gaaagaagagaagaataattta |
388 |
Q |
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| T |
8167346 |
gaaagaagagaataattattta |
8167325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 8999268 - 8999198
Alignment:
| Q |
112 |
tgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaa |
182 |
Q |
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||||||||| ||||| |||||| ||||||||||||||||||| ||| || ||| |||| |||||||||||| |
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| T |
8999268 |
tgataccttctcaaaacgcaaattaggactcttcaacaaagtcacataactattcattttatgcaatgcaa |
8999198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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