View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13906_low_1 (Length: 556)

Name: NF13906_low_1
Description: NF13906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13906_low_1
NF13906_low_1
[»] chr6 (5 HSPs)
chr6 (19-518)||(23632757-23633256)
chr6 (520-556)||(1897702-1897738)
chr6 (524-556)||(2333370-2333402)
chr6 (528-556)||(3821383-3821411)
chr6 (524-556)||(19789110-19789142)
[»] chr1 (27 HSPs)
chr1 (473-518)||(39220335-39220380)
chr1 (474-518)||(33422106-33422150)
chr1 (474-518)||(44112594-44112638)
chr1 (473-518)||(44641789-44641834)
chr1 (474-518)||(24775115-24775159)
chr1 (524-556)||(8464547-8464579)
chr1 (524-556)||(30530433-30530465)
chr1 (524-556)||(34002354-34002386)
chr1 (474-518)||(49589859-49589903)
chr1 (524-556)||(49589997-49590029)
chr1 (522-556)||(29264020-29264054)
chr1 (519-556)||(5477181-5477218)
chr1 (519-556)||(14983789-14983826)
chr1 (519-556)||(29293964-29294001)
chr1 (519-556)||(40139131-40139168)
chr1 (519-556)||(43612098-43612135)
chr1 (519-556)||(45272178-45272215)
chr1 (519-556)||(49453496-49453533)
chr1 (519-556)||(51571420-51571457)
chr1 (524-556)||(2492418-2492450)
chr1 (528-556)||(11068430-11068458)
chr1 (524-556)||(24774980-24775012)
chr1 (524-556)||(33422253-33422285)
chr1 (528-556)||(42792305-42792333)
chr1 (528-556)||(44112459-44112487)
chr1 (528-556)||(44641941-44641969)
chr1 (524-556)||(48872384-48872416)
[»] chr2 (14 HSPs)
chr2 (474-518)||(7497878-7497922)
chr2 (475-518)||(546273-546316)
chr2 (519-556)||(8482250-8482287)
chr2 (519-556)||(12193601-12193638)
chr2 (524-556)||(546419-546451)
chr2 (524-556)||(42554781-42554813)
chr2 (519-556)||(45202150-45202187)
chr2 (524-556)||(6666025-6666057)
chr2 (524-556)||(7498025-7498057)
chr2 (475-511)||(34261912-34261948)
chr2 (528-556)||(35965580-35965608)
chr2 (524-556)||(42665846-42665878)
chr2 (524-556)||(44189832-44189864)
chr2 (520-556)||(44422983-44423019)
[»] chr3 (12 HSPs)
chr3 (475-518)||(622347-622390)
chr3 (476-518)||(44334690-44334732)
chr3 (524-556)||(43900791-43900823)
chr3 (524-556)||(44334835-44334867)
chr3 (519-556)||(3484775-3484812)
chr3 (475-512)||(3484891-3484928)
chr3 (519-556)||(48490531-48490568)
chr3 (474-518)||(4208115-4208159)
chr3 (524-556)||(24748600-24748632)
chr3 (524-556)||(28300682-28300714)
chr3 (524-556)||(35425706-35425738)
chr3 (524-556)||(46315989-46316021)
[»] scaffold0238 (1 HSPs)
scaffold0238 (473-518)||(16531-16576)
[»] chr8 (11 HSPs)
chr8 (473-518)||(29910098-29910143)
chr8 (475-518)||(41304870-41304913)
chr8 (524-556)||(3756906-3756938)
chr8 (519-553)||(44103784-44103818)
chr8 (519-556)||(1370303-1370340)
chr8 (519-556)||(5502376-5502413)
chr8 (519-556)||(7325731-7325768)
chr8 (519-556)||(9047088-9047125)
chr8 (520-556)||(895939-895975)
chr8 (528-556)||(34996398-34996426)
chr8 (528-556)||(41305020-41305048)
[»] chr4 (19 HSPs)
chr4 (474-515)||(1688315-1688356)
chr4 (519-556)||(27384192-27384229)
chr4 (524-556)||(10096776-10096808)
chr4 (524-556)||(42516655-42516687)
chr4 (524-556)||(51397905-51397937)
chr4 (519-556)||(9828001-9828038)
chr4 (519-556)||(41119499-41119536)
chr4 (519-556)||(42490925-42490962)
chr4 (519-556)||(46173555-46173592)
chr4 (524-556)||(17363235-17363267)
chr4 (528-556)||(25139993-25140021)
chr4 (520-556)||(28480557-28480593)
chr4 (520-556)||(28481431-28481467)
chr4 (520-556)||(28482306-28482342)
chr4 (524-556)||(29525863-29525895)
chr4 (524-556)||(30973602-30973634)
chr4 (528-556)||(31147236-31147264)
chr4 (520-556)||(37547070-37547106)
chr4 (528-556)||(46912837-46912865)
[»] chr5 (11 HSPs)
chr5 (475-518)||(42825254-42825297)
chr5 (519-553)||(8725440-8725474)
chr5 (519-556)||(13734378-13734415)
chr5 (519-556)||(6865805-6865842)
chr5 (519-556)||(12878761-12878798)
chr5 (519-556)||(32682147-32682184)
chr5 (519-556)||(33567241-33567278)
chr5 (527-556)||(34952443-34952472)
chr5 (524-553)||(39840743-39840772)
chr5 (528-556)||(20125394-20125422)
chr5 (520-556)||(30334785-30334821)
[»] chr7 (11 HSPs)
chr7 (519-556)||(43444640-43444677)
chr7 (524-556)||(5724043-5724075)
chr7 (519-556)||(2469708-2469745)
chr7 (519-556)||(8459619-8459656)
chr7 (519-556)||(22330649-22330686)
chr7 (519-556)||(31785489-31785526)
chr7 (519-556)||(37352008-37352045)
chr7 (519-552)||(49089182-49089215)
chr7 (524-556)||(17500702-17500734)
chr7 (524-556)||(17552480-17552512)
chr7 (476-508)||(31364787-31364819)
[»] scaffold0504 (2 HSPs)
scaffold0504 (477-512)||(10637-10672)
scaffold0504 (528-556)||(10773-10801)
[»] scaffold0155 (1 HSPs)
scaffold0155 (519-556)||(3289-3326)
[»] scaffold0111 (1 HSPs)
scaffold0111 (524-556)||(36900-36932)
[»] scaffold0024 (1 HSPs)
scaffold0024 (524-556)||(60474-60506)
[»] scaffold0020 (1 HSPs)
scaffold0020 (524-556)||(155911-155943)
[»] scaffold0014 (1 HSPs)
scaffold0014 (528-556)||(199271-199299)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 23632757 - 23633256
Alignment:
Q  19 cctcccgtgcttgctacaagcttcactgccttagggcagattcttttcgcgttcggatccagggacagtcgtggtgtttgtattgcagttgcggttgtaa 118  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23632757 cctcccttgcttgctacgagcttcacttccttagggcagattcttttcgcgttcggatccagggacagtcgtggtgtttatattgcagttgcggttgtaa 23632856  T
Q  119 tgcaaaatcggtaaaattaaggtgtgaaggtatgtattaggtgtagagttgtgttacattgttctttagtatgtatgcctagagattatttcaaacagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23632857 tgcaaaatcggtaaaattaaggtgtgaaggtatgtattaggtgtagagttgtgttacattgctctttagtatgtatgcctagagattatttcaaacagga 23632956  T
Q  219 ttgttacagacactctttccaacactctcttcaacggccgttttcttaaaccatgactgatttaaaaacaacttgttgtcggctattgctgttaaattct 318  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23632957 ttgttacagacactctttccaacactctcttcaacggtcgttctcttaaaccatgactgatttaaaaacaacttgttgtcggctattgctgttaaattct 23633056  T
Q  319 tttatgtacaacagccaaccaatgttcaacttctattcggttaaatttcaacacacttaatttcttttgacatatcatattgtaacagactgcaaaaata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23633057 tttatgtacaacagccaaccaatgttcaacttctattcggttaaatttcaacacacttaatttcttttgacatatcatattgtaacagactgcaaaaata 23633156  T
Q  419 tcattgatagtatcttgtatgtttgcaaagtgtgctataaattgtaactttttcaaagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||    
T  23633157 tcattgatagtatcttgtatgtttgcaaagtgtgctataaattgtaactttttcaaagagtggtgatatattgacaaccatttctgacaattttgttgac 23633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 1897738 - 1897702
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| ||||||||||||||||||||||||    
T  1897738 agagaaagttgtcataaagtggttgtacaaatatcat 1897702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 2333402 - 2333370
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||| ||||||    
T  2333402 aaagttgtaataaagtggttgtacaattatcat 2333370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 3821411 - 3821383
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  3821411 ttgtaataaagtggttgtacaaatatcat 3821383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 19789110 - 19789142
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  19789110 aaagttgtaataaaatggttgtacaaatatcat 19789142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 518
Target Start/End: Complemental strand, 39220380 - 39220335
Alignment:
Q  473 aaagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  39220380 aaagagtagtgatatattgacaaccatttgtgacaactttgttgac 39220335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 33422106 - 33422150
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  33422106 aagagtagtgatatattgacaaccatttgtgacaactttgttgac 33422150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 44112638 - 44112594
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  44112638 aagagtagtgatatattgacaaccatttgtgacaactttgttgac 44112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 44641789 - 44641834
Alignment:
Q  473 aaagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  44641789 aaagagtagtgatatattgacaaccatttgtgataactttgttgac 44641834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 24775159 - 24775115
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  24775159 aagagtagtgatatattgacaaccatttttgacaactttgttgac 24775115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 8464547 - 8464579
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  8464547 aaagttgtaataaagtggttgtacaaatatcat 8464579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 30530433 - 30530465
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  30530433 aaagttgtaataaagtggttgtacaaatatcat 30530465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 34002354 - 34002386
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  34002354 aaagttgtaataaagtggttgtacaaatatcat 34002386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 49589859 - 49589903
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||    
T  49589859 aagagtagtgatatattgataactatttgtgacaactttgttgac 49589903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 49589997 - 49590029
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  49589997 aaagttgtaataaagtggttgtacaaatatcat 49590029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 29264054 - 29264020
Alignment:
Q  522 agaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||| ||||||||||||||||||||||||    
T  29264054 agaaagttgtcataaagtggttgtacaaatatcat 29264020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 5477181 - 5477218
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  5477181 gagagaaagttgtcacaaagtggttgtacaaatatcat 5477218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 14983826 - 14983789
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  14983826 gagagaaagttgttaaaaagtggttgtacaaatatcat 14983789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 29294001 - 29293964
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  29294001 gagagaaagttgtcataaagtagttgtacaaatatcat 29293964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 40139168 - 40139131
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  40139168 gagagaaagttgtcataaaatggttgtacaaatatcat 40139131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 43612098 - 43612135
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  43612098 gagagaaagttgtcataaaatggttgtacaaatatcat 43612135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 45272178 - 45272215
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  45272178 gagagaaagttgtcaaaaagtggttgtacaaatatcat 45272215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 49453533 - 49453496
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  49453533 gagagaaagttgtcacaaagtggttgtacaaatatcat 49453496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 51571457 - 51571420
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  51571457 gagagaaagttgtcaaaaagtggttgtacaaatatcat 51571420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 2492450 - 2492418
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  2492450 aaagttgtaataaaatggttgtacaaatatcat 2492418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 11068458 - 11068430
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  11068458 ttgtaataaagtggttgtacaaatatcat 11068430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 24775012 - 24774980
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||| ||||||||||    
T  24775012 aaagttgtaataaagtggttgttcaaatatcat 24774980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 33422253 - 33422285
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||||||||||| |||||||    
T  33422253 aaagttgtaataaagtggttgtacagatatcat 33422285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 42792333 - 42792305
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  42792333 ttgtaataaagtggttgtacaaatatcat 42792305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 44112487 - 44112459
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  44112487 ttgtaataaagtggttgtacaaatatcat 44112459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 44641941 - 44641969
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  44641941 ttgtaataaagtggttgtacaaatatcat 44641969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 48872416 - 48872384
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||||    
T  48872416 aaagttgtcataaagtggttgtacaaatatcat 48872384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 7497878 - 7497922
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  7497878 aagagtagtgatatattgacaaccatttgtgacaactttgttgac 7497922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 546273 - 546316
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  546273 agagtagtgatatattgacaaccatttgtgacaactttgttgac 546316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 8482250 - 8482287
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8482250 gagagaaagttgtcataaagtggttgtacaaatatcat 8482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 12193638 - 12193601
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12193638 gagaaaaagttgtaataaagtggttgtacaaatatcat 12193601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 546419 - 546451
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  546419 aaagttgtaataaagtggttgtacaaatatcat 546451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 42554813 - 42554781
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  42554813 aaagttgtaataaagtggttgtacaaatatcat 42554781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 45202150 - 45202187
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  45202150 gagagaaagttgtaaaaaaatggttgtacaaatatcat 45202187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 6666057 - 6666025
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  6666057 aaagttgtaataaaatggttgtacaaatatcat 6666025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 7498025 - 7498057
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  7498025 aaagttgtaataaaatggttgtacaaatatcat 7498057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 34261912 - 34261948
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaactt 511  Q
    |||||||||||||||  ||||||||||||||||||||    
T  34261912 agagtagtgatatatgtacaaccatttgtgacaactt 34261948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 35965608 - 35965580
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  35965608 ttgtaataaagtggttgtacaaatatcat 35965580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 42665846 - 42665878
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||| |||||||||||||||    
T  42665846 aaagttgtaataaagtgattgtacaaatatcat 42665878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 44189864 - 44189832
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||||    
T  44189864 aaagttgtcataaagtggttgtacaaatatcat 44189832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 44423019 - 44422983
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| | ||||||||||||||||||||||    
T  44423019 agagaaagttgttaaaaagtggttgtacaaatatcat 44422983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 622347 - 622390
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  622347 agagtagtgatatattgacaaccatttgtgacaactttgttgac 622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 518
Target Start/End: Original strand, 44334690 - 44334732
Alignment:
Q  476 gagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  44334690 gagtagtgatatattgacaaccatttgtgacaactttgttgac 44334732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 43900791 - 43900823
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  43900791 aaagttgtaataaagtggttgtacaaatatcat 43900823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 44334835 - 44334867
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  44334835 aaagttgtaataaagtggttgtacaaatatcat 44334867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 3484812 - 3484775
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  3484812 gagagaaagttgtaataaaatggttggacaaatatcat 3484775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 3484928 - 3484891
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaacttt 512  Q
    |||||||||||||||  |||||||||||||||||||||    
T  3484928 agagtagtgatatatgtacaaccatttgtgacaacttt 3484891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 48490531 - 48490568
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  48490531 gagagaaagttgtacaaaagtggttgtacaaatatcat 48490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 4208115 - 4208159
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||  |||||||| |||||||| |||||||||    
T  4208115 aagagtagtgatatatgtacaaccatctgtgacaattttattgac 4208159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 24748632 - 24748600
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||| |||||||||||||||||||||||||    
T  24748632 aaagttgcaataaagtggttgtacaaatatcat 24748600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 28300682 - 28300714
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||||    
T  28300682 aaagttgtcataaagtggttgtacaaatatcat 28300714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 35425706 - 35425738
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||||||||||| |||||||    
T  35425706 aaagttgtaataaagtggttgtacatatatcat 35425738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 46315989 - 46316021
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||||    
T  46315989 aaagttgtcataaagtggttgtacaaatatcat 46316021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 518
Target Start/End: Complemental strand, 16576 - 16531
Alignment:
Q  473 aaagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  16576 aaagagtagtgatatattgacaaccatttatgacaactttgttgac 16531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 29910098 - 29910143
Alignment:
Q  473 aaagagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  29910098 aaagagtagtgatatattgacaaccatttttgacaactttgttgac 29910143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 41304870 - 41304913
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  41304870 agagtagtgatatattgacaacaatttgtgacaactttgttgac 41304913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 3756938 - 3756906
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  3756938 aaagttgtaataaagtggttgtacaaatatcat 3756906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 553
Target Start/End: Complemental strand, 44103818 - 44103784
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatat 553  Q
    ||||||||||||| |||||||||||||||||||||    
T  44103818 gagagaaagttgtcataaagtggttgtacaaatat 44103784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 1370303 - 1370340
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  1370303 gagagaaagttgttacaaagtggttgtacaaatatcat 1370340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 5502413 - 5502376
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  5502413 gagagaaagttgtcacaaagtggttgtacaaatatcat 5502376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 7325768 - 7325731
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  7325768 gagagaaagttgttataaagtggatgtacaaatatcat 7325731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 9047088 - 9047125
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  9047088 gagagaaagttgtcaaaaagtggttgtacaaatatcat 9047125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 895975 - 895939
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| | ||||||||||||||||||||||    
T  895975 agagaaagttgtcaaaaagtggttgtacaaatatcat 895939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 34996398 - 34996426
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  34996398 ttgtaataaagtggttgtacaaatatcat 34996426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 41305020 - 41305048
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  41305020 ttgtaataaagtggttgtacaaatatcat 41305048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 515
Target Start/End: Original strand, 1688315 - 1688356
Alignment:
Q  474 aagagtagtgatatattgacaaccatttgtgacaactttatt 515  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  1688315 aagagtagtgatatattgacaaccatttgtgacaattttatt 1688356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 27384229 - 27384192
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  27384229 gagagaaagttgtaataaaatggttgtacaaatatcat 27384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 10096776 - 10096808
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  10096776 aaagttgtaataaagtggttgtacaaatatcat 10096808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 42516687 - 42516655
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  42516687 aaagttgtaataaagtggttgtacaaatatcat 42516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 51397905 - 51397937
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  51397905 aaagttgtaataaagtggttgtacaaatatcat 51397937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 9828001 - 9828038
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9828001 gagagaaagttgtactaaaatggttgtacaaatatcat 9828038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 41119499 - 41119536
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  41119499 gagagaaagttgtcacaaagtggttgtacaaatatcat 41119536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 42490962 - 42490925
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  42490962 gagagaaagttgtcaaaaagtggttgtacaaatatcat 42490925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 46173592 - 46173555
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  46173592 gagagaaagttgtcacaaagtggttgtacaaatatcat 46173555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 17363267 - 17363235
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||| |||||||||||||||    
T  17363267 aaagttgtaataaagtgattgtacaaatatcat 17363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 25139993 - 25140021
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  25139993 ttgtaataaagtggttgtacaaatatcat 25140021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 28480557 - 28480593
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| |||||||||||||| |||||||||    
T  28480557 agagaaagttgtcataaagtggttgtataaatatcat 28480593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 28481431 - 28481467
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| |||||||||||||| |||||||||    
T  28481431 agagaaagttgtcataaagtggttgtataaatatcat 28481467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 28482306 - 28482342
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| |||||||||||||| |||||||||    
T  28482306 agagaaagttgtcataaagtggttgtataaatatcat 28482342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 29525895 - 29525863
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  29525895 aaagttgtaataaaatggttgtacaaatatcat 29525863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 30973634 - 30973602
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||||    
T  30973634 aaagttgtcataaagtggttgtacaaatatcat 30973602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 31147264 - 31147236
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  31147264 ttgtaataaagtggttgtacaaatatcat 31147236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 37547106 - 37547070
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||| | ||||||||||||||||||||||    
T  37547106 agagaaagttgtcacaaagtggttgtacaaatatcat 37547070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 46912837 - 46912865
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  46912837 ttgtaataaagtggttgtacaaatatcat 46912865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 42825297 - 42825254
Alignment:
Q  475 agagtagtgatatattgacaaccatttgtgacaactttattgac 518  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  42825297 agagtagtgatatattgacaaccatttgtgacaattttgttgac 42825254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 553
Target Start/End: Original strand, 8725440 - 8725474
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatat 553  Q
    |||||||||||||||||||||||||||||||||||    
T  8725440 gagagaaagttgtaataaagtggttgtacaaatat 8725474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 13734378 - 13734415
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13734378 gagagaaagttgtcataaagtggttgtacaaatatcat 13734415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 6865805 - 6865842
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  6865805 gagagaaagttgtcacaaagtggttgtacaaatatcat 6865842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 12878798 - 12878761
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  12878798 gagagaaagttataataaaatggttgtacaaatatcat 12878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 32682147 - 32682184
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  32682147 gagagaaaattgtaataaagtggttgtacaaaaatcat 32682184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 33567241 - 33567278
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  33567241 gagagaaagttgtcacaaagtggttgtacaaatatcat 33567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 556
Target Start/End: Original strand, 34952443 - 34952472
Alignment:
Q  527 gttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||||||||||||||||||||    
T  34952443 gttgtaataaagtggttgtacaaatatcat 34952472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 553
Target Start/End: Original strand, 39840743 - 39840772
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatat 553  Q
    ||||||||||||||||||||||||||||||    
T  39840743 aaagttgtaataaagtggttgtacaaatat 39840772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 20125422 - 20125394
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  20125422 ttgtaataaagtggttgtacaaatatcat 20125394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 30334785 - 30334821
Alignment:
Q  520 agagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  30334785 agagaaaattgtcataaagtggttgtacaaatatcat 30334821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 43444677 - 43444640
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  43444677 gagagaaagttgtcataaagtggttgtacaaatatcat 43444640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 5724075 - 5724043
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||||||    
T  5724075 aaagttgtaataaagtggttgtacaaatatcat 5724043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 2469745 - 2469708
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  2469745 gagagaaagttgtcacaaagtggttgtacaaatatcat 2469708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 8459656 - 8459619
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  8459656 gagagaaagttgttaaaaagtggttgtacaaatatcat 8459619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 22330649 - 22330686
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  22330649 gagagaaagttgtcacaaagtggttgtacaaatatcat 22330686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 31785489 - 31785526
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  31785489 gagagaaagttttcataaagtggttgtacaaatatcat 31785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 37352008 - 37352045
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  37352008 gagagaaagttgtcacaaagtggttgtacaaatatcat 37352045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 552
Target Start/End: Original strand, 49089182 - 49089215
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaata 552  Q
    |||| |||||||||||||||||||||||||||||    
T  49089182 gagaaaaagttgtaataaagtggttgtacaaata 49089215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 17500734 - 17500702
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||| ||||||||||||||||||||||||||    
T  17500734 aaagttataataaagtggttgtacaaatatcat 17500702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 17552480 - 17552512
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||| ||||||||||||||||||||||||||    
T  17552480 aaagttataataaagtggttgtacaaatatcat 17552512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 508
Target Start/End: Original strand, 31364787 - 31364819
Alignment:
Q  476 gagtagtgatatattgacaaccatttgtgacaa 508  Q
    ||||||||||||||||||||| |||||||||||    
T  31364787 gagtagtgatatattgacaactatttgtgacaa 31364819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 512
Target Start/End: Original strand, 10637 - 10672
Alignment:
Q  477 agtagtgatatattgacaaccatttgtgacaacttt 512  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10637 agtagtgatatattgacaaccatttttgacaacttt 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Original strand, 10773 - 10801
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  10773 ttgtaataaagtggttgtacaaatatcat 10801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 556
Target Start/End: Original strand, 3289 - 3326
Alignment:
Q  519 gagagaaagttgtaataaagtggttgtacaaatatcat 556  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3289 gagagaaagttgtgagaaagtggttgtacaaatatcat 3326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Original strand, 36900 - 36932
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||| ||||||||||    
T  36900 aaagttgtaataaagtggttgtgcaaatatcat 36932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 60506 - 60474
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  60506 aaagttgtaataaaatggttgtacaaatatcat 60474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 155943 - 155911
Alignment:
Q  524 aaagttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||| ||||||||||||||||||    
T  155943 aaagttgtaataaaatggttgtacaaatatcat 155911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 556
Target Start/End: Complemental strand, 199299 - 199271
Alignment:
Q  528 ttgtaataaagtggttgtacaaatatcat 556  Q
    |||||||||||||||||||||||||||||    
T  199299 ttgtaataaagtggttgtacaaatatcat 199271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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