View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13906_low_2 (Length: 459)

Name: NF13906_low_2
Description: NF13906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13906_low_2
NF13906_low_2
[»] chr3 (11 HSPs)
chr3 (3-150)||(8592494-8592641)
chr3 (297-354)||(8592716-8592773)
chr3 (71-155)||(6418362-6418446)
chr3 (175-221)||(6552180-6552226)
chr3 (306-350)||(6584689-6584733)
chr3 (80-155)||(6749746-6749821)
chr3 (313-351)||(6552118-6552156)
chr3 (39-109)||(8473442-8473512)
chr3 (181-221)||(6418312-6418352)
chr3 (181-217)||(6471877-6471913)
chr3 (181-217)||(6749831-6749867)
[»] scaffold0445 (1 HSPs)
scaffold0445 (40-155)||(8664-8779)
[»] scaffold0425 (2 HSPs)
scaffold0425 (175-221)||(5150-5196)
scaffold0425 (313-351)||(5066-5104)
[»] scaffold2089 (1 HSPs)
scaffold2089 (40-109)||(977-1046)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 8592494 - 8592641
Alignment:
Q  3 ataggtgaaagtaacactcattttagtactgatgggataacttaatttgaaagattagcttttgtagacaaaggaaaagattacctgaaagtttgaggac 102  Q
    |||| |||||||||||||||||||| ||| |||   ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||  ||| ||    
T  8592494 atagttgaaagtaacactcattttactacagattacataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtcggagaac 8592593  T
Q  103 aaacaaagtgaaatttttgtcagaaaagcacaaactgatatctgccaa 150  Q
    | ||||| ||| || |||||||||||| ||||||||||||||||||||    
T  8592594 acacaaattgagatctttgtcagaaaaacacaaactgatatctgccaa 8592641  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 8592716 - 8592773
Alignment:
Q  297 tgtgttcaatattcagagagagaagttacttgagagtgtgtggaacaaacaaactcaa 354  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8592716 tgtgttcactattcagagagagaagttacttgagagtatgtggaacaaacaaactcaa 8592773  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 6418446 - 6418362
Alignment:
Q  71 caaaggaaaagattacctgaaagtttgaggacaaacaaagtgaaatttttgtcagaaaagcacaaactgatatctgccaaagaaa 155  Q
    |||||||||||||||||||||||| |||| ||||||| | ||| || |||| ||| |||||||||||| | ||||||||| ||||    
T  6418446 caaaggaaaagattacctgaaagtgtgagaacaaacagattgagatctttgacagtaaagcacaaacttagatctgccaaggaaa 6418362  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 6552226 - 6552180
Alignment:
Q  175 agaaagatttagaggcaatataaaatatatcaaataggaaatttgag 221  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  6552226 agaaagatttagaggcaatataaaaaatatgaaatatgaaatttgag 6552180  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 6584733 - 6584689
Alignment:
Q  306 tattcagagagagaagttacttgagagtgtgtggaacaaacaaac 350  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||    
T  6584733 tatttagagagagaaattacttgaaagtgtgtggaacaaacaaac 6584689  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 6749746 - 6749821
Alignment:
Q  80 agattacctgaaagtttgaggacaaacaaagtgaaatttttgtcagaaaagcacaaactgatatctgccaaagaaa 155  Q
    ||||||||||||||| |||| ||||||||| ||| || ||||||  |||| ||||| |||| ||||||||| ||||    
T  6749746 agattacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagctgagatctgccaaggaaa 6749821  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 6552156 - 6552118
Alignment:
Q  313 agagagaagttacttgagagtgtgtggaacaaacaaact 351  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  6552156 agagataagttacttgaaagtgtgtggaacaaacaaact 6552118  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 8473442 - 8473512
Alignment:
Q  39 ataacttaatttgaaagattagcttttgtagacaaaggaaaagattacctgaaagtttgaggacaaacaaa 109  Q
    ||||| ||||||||||||||| |||||||  | ||| ||| ||||||||||||||| |||  |||||||||    
T  8473442 ataacataatttgaaagattaacttttgttaagaaatgaagagattacctgaaagtgtgaaaacaaacaaa 8473512  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 6418352 - 6418312
Alignment:
Q  181 atttagaggcaatataaaatatatcaaataggaaatttgag 221  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  6418352 atttagaggcaatataaaatatgtgaaatatgaaatttgag 6418312  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 6471913 - 6471877
Alignment:
Q  181 atttagaggcaatataaaatatatcaaataggaaatt 217  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  6471913 atttagaggcaatataaaatatgtcaaatatgaaatt 6471877  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6749831 - 6749867
Alignment:
Q  181 atttagaggcaatataaaatatatcaaataggaaatt 217  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  6749831 atttagaggcaatataaaatatgtcaaatatgaaatt 6749867  T

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Target: scaffold0445 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 8664 - 8779
Alignment:
Q  40 taacttaatttgaaagattagcttttgtagacaaaggaaaagattacctgaaagtttgaggacaaacaaagtgaaatttttgtcagaaaagcacaaactg 139  Q
    |||| |||||| ||||||||  ||||||  ||||||||| | ||||||||||| | | || ||||| ||| ||| || ||||||| |||| |||||||||    
T  8664 taacataatttaaaagattaagttttgttaacaaaggaagaaattacctgaaaatgtaagaacaaataaattgagatctttgtcacaaaaacacaaactg 8763  T
Q  140 atatctgccaaagaaa 155  Q
    | ||||||||| ||||    
T  8764 agatctgccaaggaaa 8779  T

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Target: scaffold0425 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 5196 - 5150
Alignment:
Q  175 agaaagatttagaggcaatataaaatatatcaaataggaaatttgag 221  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  5196 agaaagatttagaggcaatataaaaaatatgaaatatgaaatttgag 5150  T

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Target: scaffold0425; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 5104 - 5066
Alignment:
Q  313 agagagaagttacttgagagtgtgtggaacaaacaaact 351  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  5104 agagataagttacttgaaagtgtgtggaacaaacaaact 5066  T

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Target: scaffold2089 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 1046 - 977
Alignment:
Q  40 taacttaatttgaaagattagcttttgtagacaaaggaaaagattacctgaaagtttgaggacaaacaaa 109  Q
    |||| |||||||||||||||  | ||||  ||||||||| ||||||||||||||| |||| |||||||||    
T  1046 taacataatttgaaagattaagtgttgttaacaaaggaagagattacctgaaagtgtgagaacaaacaaa 977  T

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