View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13906_low_4 (Length: 249)

Name: NF13906_low_4
Description: NF13906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13906_low_4
NF13906_low_4
[»] chr6 (2 HSPs)
chr6 (1-237)||(23633372-23633611)
chr6 (1-35)||(32729877-32729911)
[»] chr8 (4 HSPs)
chr8 (1-32)||(12045702-12045733)
chr8 (1-30)||(67210-67239)
chr8 (1-33)||(22836188-22836220)
chr8 (3-35)||(41746808-41746840)
[»] chr7 (2 HSPs)
chr7 (1-30)||(28824496-28824525)
chr7 (1-33)||(31785509-31785541)
[»] chr5 (2 HSPs)
chr5 (1-33)||(8897372-8897404)
chr5 (1-29)||(33393628-33393656)
[»] chr2 (1 HSPs)
chr2 (1-29)||(44189821-44189849)
[»] chr1 (1 HSPs)
chr1 (1-33)||(49596225-49596257)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23633372 - 23633611
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaattacaataactcgccatgattctgacataccaatcacgaaaccaaacattcacatcacctgtttaagg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23633372 tggttgtagaaatatcatttctcttttcaaaattacaataactcgccatgattctgacataccaatcacgaaaccaaacattcacatcacctgtttaagg 23633471  T
Q  101 aaaaatgaaatcttgtgagtatagtgaactgtcattgcaatattaaaaaagggatgcactttatacctgattagttagattcacagaaaagctac-nnnn 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         
T  23633472 aaaaatgaaatcttgtgagtatagtgaactgtcattgcaatattaaaaaagggatgcactttatacccgattagttagattcacagaaaagctacaaaaa 23633571  T
Q  200 nnntac--aatctttatcaatttccatctatagtattatc 237  Q
       |||  ||||||||||||||||||||||||||||||||    
T  23633572 aaatacaaaatctttatcaatttccatctatagtattatc 23633611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32729911 - 32729877
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaatta 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  32729911 tggttgtacaaatatcatttctctttttaaaatta 32729877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12045702 - 12045733
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  12045702 tggttgtacaaatatcatttctcttttcaaaa 12045733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 67210 - 67239
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  67210 tggttgtacaaatatcatttctcttttcaa 67239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22836188 - 22836220
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaat 33  Q
    ||||||||||||||||||||||||| |||||||    
T  22836188 tggttgtacaaatatcatttctcttatcaaaat 22836220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 41746840 - 41746808
Alignment:
Q  3 gttgtacaaatatcatttctcttttcaaaatta 35  Q
    ||||||||||||||||||||||| |||||||||    
T  41746840 gttgtacaaatatcatttctcttctcaaaatta 41746808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28824525 - 28824496
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  28824525 tggttgtacaaatatcatttctcttttcaa 28824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31785509 - 31785541
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaat 33  Q
    ||||||||||||||||||||||||||| |||||    
T  31785509 tggttgtacaaatatcatttctcttttgaaaat 31785541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8897404 - 8897372
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  8897404 tggttgtacaaatatcatttctctattcaaaat 8897372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33393656 - 33393628
Alignment:
Q  1 tggttgtacaaatatcatttctcttttca 29  Q
    |||||||||||||||||||||||||||||    
T  33393656 tggttgtacaaatatcatttctcttttca 33393628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44189849 - 44189821
Alignment:
Q  1 tggttgtacaaatatcatttctcttttca 29  Q
    |||||||||||||||||||||||||||||    
T  44189849 tggttgtacaaatatcatttctcttttca 44189821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49596257 - 49596225
Alignment:
Q  1 tggttgtacaaatatcatttctcttttcaaaat 33  Q
    |||||||||||||||||||||||||| ||||||    
T  49596257 tggttgtacaaatatcatttctctttccaaaat 49596225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University