View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13907_low_1 (Length: 402)

Name: NF13907_low_1
Description: NF13907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13907_low_1
NF13907_low_1
[»] chr1 (7 HSPs)
chr1 (7-193)||(23473789-23473974)
chr1 (98-193)||(40961555-40961650)
chr1 (35-122)||(35306700-35306787)
chr1 (357-393)||(48742014-48742050)
chr1 (249-289)||(7013207-7013247)
chr1 (298-340)||(37920147-37920189)
chr1 (249-289)||(52689536-52689576)
[»] chr3 (6 HSPs)
chr3 (4-181)||(8925810-8925986)
chr3 (346-402)||(55480963-55481019)
chr3 (35-122)||(35231756-35231843)
chr3 (35-186)||(46651297-46651448)
chr3 (247-340)||(30478439-30478533)
chr3 (298-341)||(16280944-16280987)
[»] chr5 (7 HSPs)
chr5 (249-340)||(25994509-25994600)
chr5 (249-340)||(26092536-26092627)
chr5 (249-289)||(25994998-25995038)
chr5 (249-340)||(26093037-26093128)
chr5 (298-340)||(32804888-32804930)
chr5 (300-340)||(14410252-14410292)
chr5 (357-393)||(35110118-35110153)
[»] scaffold0027 (1 HSPs)
scaffold0027 (249-338)||(49184-49272)
[»] chr4 (3 HSPs)
chr4 (249-340)||(32303870-32303962)
chr4 (298-340)||(40361677-40361719)
chr4 (304-340)||(40277072-40277108)
[»] chr2 (6 HSPs)
chr2 (298-337)||(19004907-19004946)
chr2 (249-288)||(26129313-26129352)
chr2 (353-391)||(14413561-14413599)
chr2 (298-340)||(19004820-19004862)
chr2 (298-340)||(33710906-33710948)
chr2 (303-336)||(26424973-26425006)
[»] chr8 (3 HSPs)
chr8 (298-340)||(45156029-45156071)
chr8 (300-340)||(7130146-7130186)
chr8 (249-289)||(38077168-38077208)
[»] chr7 (2 HSPs)
chr7 (353-391)||(20188367-20188405)
chr7 (298-338)||(30859861-30859901)
[»] chr6 (2 HSPs)
chr6 (298-340)||(31778841-31778883)
chr6 (249-289)||(12488472-12488512)
[»] scaffold0015 (1 HSPs)
scaffold0015 (354-391)||(82692-82729)
[»] scaffold0007 (1 HSPs)
scaffold0007 (302-339)||(232390-232427)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 23473974 - 23473789
Alignment:
Q  7 catgaagaaggagaaaaagacatggtatgtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcc 106  Q
    ||||||| |||| || |||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||  |||| |||| ||||||||     
T  23473974 catgaaggaggacaagaagacatgatatgtgatggaatacgaaaatagggaaaaaa-agtaattaattaattaagttgtatcattccattgtatacctca 23473876  T
Q  107 caaattggagggaatggaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccactacattcaatttt 193  Q
    |||||||||||||||| ||| |||| | ||||  ||||||  |||| ||||||||||| ||||||| |||||| | |||||||||||    
T  23473875 caaattggagggaatgaaaaacaagagtagatgatggtatgggatggaatggattccatcatgttccattccattccattcaatttt 23473789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 40961650 - 40961555
Alignment:
Q  98 tatacctcccaaattggagggaatggaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccactacattcaatttt 193  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  ||||||| |||| ||| ||||||||||| ||| ||| ||||||||||||||||    
T  40961650 tatacctcccaaattggagggaatgaaaaacaagaggagatgatggtataggatggaatagattccaccatattctatttcactacattcaatttt 40961555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 35306700 - 35306787
Alignment:
Q  35 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatg 122  Q
    |||||| | ||| |||||||||||||||||||||| |   |||||||| |||||||| ||||  |||||||||||||||| |||||||    
T  35306700 gtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttccattccattgcatacctcccaaattggggggaatg 35306787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 48742014 - 48742050
Alignment:
Q  357 tcttcttccctctctctccttccgatttcattcaatc 393  Q
    |||||||||||||||||||||||||||||||||||||    
T  48742014 tcttcttccctctctctccttccgatttcattcaatc 48742050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 7013207 - 7013247
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 289  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  7013207 ttaactaacgcaagtgtaaaattaacatgacttaaaatttc 7013247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 37920189 - 37920147
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| |||||||||||  |||||||||||||||||    
T  37920189 acacatgcgtgacttaaatcacgcaacgtgagttaactcacgc 37920147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 52689536 - 52689576
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 289  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  52689536 ttaactaacgcaagtataaaattaacatgacttaaaatttc 52689576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 8925986 - 8925810
Alignment:
Q  4 atacatgaagaaggagaaaaagacatggtatgtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacc 103  Q
    |||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||| || |||| || |||||||||||| |||| |||| ||||||    
T  8925986 atacatgaaggaggagaaaa-gacattgtatgtgatggaacaagaaaatagggataaaaaagcaattcatcaattaagttgtttcattccattgtatacc 8925888  T
Q  104 tcccaaattggagggaatggaaagcaagtggagatagtggtatatgatgaaatggattccaccatgttcaattccact 181  Q
    || || ||| |  |||||| |||  |||  |||||  | ||||| |||| ||| ||||||||||||||| ||||||||    
T  8925887 tcgcagattaggaggaatgaaaaataagacgagatgatagtataggatggaatagattccaccatgttccattccact 8925810  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 55481019 - 55480963
Alignment:
Q  346 gagtttagttatcttcttccctctctctccttccgatttcattcaatccatcccttc 402  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55481019 gagtttggttatcttcttccctctctctccttccgatttcattcaatccatctcttc 55480963  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 35231756 - 35231843
Alignment:
Q  35 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatg 122  Q
    |||||| | ||| |||||||||||||||||||||| |   |||||||| |||| ||| ||||  |||||||||||||||| |||||||    
T  35231756 gtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttctattccattgcatacctcccaaattggggggaatg 35231843  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 46651448 - 46651297
Alignment:
Q  35 gtgatggaataagaaaatagggataaaagagtaattaattaattaagttgttccatttcattctatacctcccaaattggagggaatggaaagcaagtgg 134  Q
    |||||| ||||| ||||||||||| |||  ||||||| |||||||||    | |||||||||   |||||| ||||||||| |||||| |||  |||  |    
T  46651448 gtgatgaaataaaaaaatagggatgaaatggtaattatttaattaagaaagttcatttcattgcttacctctcaaattggatggaatgaaaaataagaag 46651349  T
Q  135 agatagtggtatatgatgaaatggattccaccatgttcaattccactacatt 186  Q
    |  | ||||||||||||||||| ||| ||| ||||||| |||||||| ||||    
T  46651348 aagtggtggtatatgatgaaatagatcccatcatgttcgattccactccatt 46651297  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 30478439 - 30478533
Alignment:
Q  247 aattaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnn-acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    ||||||||||||||| | |||||||||| |||| |||||||||         |||||||||||| |||||| ||||||| |||||||||||||||    
T  30478439 aattaactaacgcaactataaaattaacatgacttaaaatttcgttaattttacacatgcgtgacttaaataacgccgcatgagttaactcacgc 30478533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 16280987 - 16280944
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgcc 341  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  16280987 acacttgcgtgacttaagtcacgccgcgtgagttaactcacgcc 16280944  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 25994509 - 25994600
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||| ||||||||||||||||| |||| |||| |||||       |||||||||||| |||| ||||||||| |||||||||||||||    
T  25994509 ttaactaatgcaagtgtaaaattaacatgacataaagtttcatttttttacacatgcgtgacttaagtcacgccgcctgagttaactcacgc 25994600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 26092536 - 26092627
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||||||||||||||||| |||| ||||||||||       |||| ||||||| |||| ||| | ||| |||||||||||||||    
T  26092536 ttaactaacgcaagtgtaaaattaacatgacttaaaatttcatttttttacacttgcgtgacttaagtcatgtcgcatgagttaactcacgc 26092627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 25995038 - 25994998
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 289  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  25995038 ttaactaacgcaagtgtaaaattaacatgacttaaaatttc 25994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 26093128 - 26093037
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    ||||| |||||||||||||||||||| |||| ||||||||||       ||||||| |||| |||| ||||||||  ||| |||||| ||||    
T  26093128 ttaaccaacgcaagtgtaaaattaacatgacttaaaatttcatttttttacacatgtgtgacttaagtcacgccgtatgaattaacttacgc 26093037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 32804930 - 32804888
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    ||||||| |||| |||| |||||||||||||||||||||||||    
T  32804930 acacatgtgtgacttaagtcacgccgcgtgagttaactcacgc 32804888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 14410252 - 14410292
Alignment:
Q  300 acatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  14410252 acatgcgtgacttaagtcacgctgcgtgagttaactcacgc 14410292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 35110118 - 35110153
Alignment:
Q  357 tcttcttccctctctctccttccgatttcattcaatc 393  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35110118 tcttcttccctctctctccttccga-ttcattcaatc 35110153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 49184 - 49272
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttcannnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcac 338  Q
    |||| ||||||||||||||||||||| |||| |||||||||        |||||||| ||| |||||||||||||| |||||||||||||    
T  49184 ttaattaacgcaagtgtaaaattaacatgacttaaaatttc-gttttttacacatgcatgacttaaatcacgccgcatgagttaactcac 49272  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 32303870 - 32303962
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttca-nnnnnnnacacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||||||||||||||||| |||| ||||||||||        |||||| ||||| |||| ||||| ||| |||||||||||||||    
T  32303870 ttaactaacgcaagtgtaaaattaacatgacttaaaatttcattttttttacacatacgtgacttaagtcacgtcgcatgagttaactcacgc 32303962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 40361719 - 40361677
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| |||| ||||||| |||||||||||||||||    
T  40361719 acacatgcgtgacttaagtcacgccacgtgagttaactcacgc 40361677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 40277108 - 40277072
Alignment:
Q  304 gcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||| |||| |||||||||||||||||||||||||    
T  40277108 gcgtgagttaagtcacgccgcgtgagttaactcacgc 40277072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 337
Target Start/End: Complemental strand, 19004946 - 19004907
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactca 337  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  19004946 acacatgcgtgacttaaatcacgccgcatgagttaactca 19004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 26129352 - 26129313
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaattt 288  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  26129352 ttaactaacgcaagtgtaaaattaacatgacttaaaattt 26129313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 14413561 - 14413599
Alignment:
Q  353 gttatcttcttccctctctctccttccgatttcattcaa 391  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  14413561 gttatcttcttccctctctcttcttctgatttcattcaa 14413599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 19004820 - 19004862
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  19004820 acacatgcgtgacttaagtcacgccgcatgagttaactcacgc 19004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 33710906 - 33710948
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| |||| |||||| ||||||||||||||||||    
T  33710906 acacatgcgtgacttaagtcacgctgcgtgagttaactcacgc 33710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 26424973 - 26425006
Alignment:
Q  303 tgcgtgatttaaatcacgccgcgtgagttaactc 336  Q
    |||||||||||| |||||||||||||||||||||    
T  26424973 tgcgtgatttaagtcacgccgcgtgagttaactc 26425006  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 45156029 - 45156071
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  45156029 acacatgcgtgacttaaatcacgctgcatgagttaactcacgc 45156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 7130146 - 7130186
Alignment:
Q  300 acatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  7130146 acatgcgtgacttaagtcacgctgcgtgagttaactcacgc 7130186  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 38077208 - 38077168
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 289  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  38077208 ttaactaacgcaagtgtaaaattaacatgatttaaaatttc 38077168  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 20188367 - 20188405
Alignment:
Q  353 gttatcttcttccctctctctccttccgatttcattcaa 391  Q
    |||||||||||||||||| || |||||||||||||||||    
T  20188367 gttatcttcttccctctcccttcttccgatttcattcaa 20188405  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 30859861 - 30859901
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcac 338  Q
    |||||||| ||| |||| |||||||||||||||||||||||    
T  30859861 acacatgcatgacttaagtcacgccgcgtgagttaactcac 30859901  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 31778841 - 31778883
Alignment:
Q  298 acacatgcgtgatttaaatcacgccgcgtgagttaactcacgc 340  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  31778841 acacatgcgtgacttaagtcacgccgcatgagttaactcacgc 31778883  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 12488472 - 12488512
Alignment:
Q  249 ttaactaacgcaagtgtaaaattaacttgacctaaaatttc 289  Q
    |||||||||| ||||||||||||||| |||| |||||||||    
T  12488472 ttaactaacgtaagtgtaaaattaacatgacttaaaatttc 12488512  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 82729 - 82692
Alignment:
Q  354 ttatcttcttccctctctctccttccgatttcattcaa 391  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  82729 ttatcttcttccctccctcttcttccgatttcattcaa 82692  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 232427 - 232390
Alignment:
Q  302 atgcgtgatttaaatcacgccgcgtgagttaactcacg 339  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  232427 atgcgtgacttaagtcacgccgcgtgagttaactcacg 232390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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