View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13907_low_2 (Length: 226)
Name: NF13907_low_2
Description: NF13907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13907_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 13272766 - 13272968
Alignment:
| Q |
7 |
tttggaacctaaggtaacaaaatcatggatattggatatattttgtaacattgatggtagcataccaattattggccaatttggtacaagttcatttttg |
106 |
Q |
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| T |
13272766 |
tttggaacctaaggtaacaaaatcatgaatattggatatattttgtaaaattgatggtagcataccaattattggccaatttggtacaagttcatttttg |
13272865 |
T |
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| Q |
107 |
tttcgtctccatatattgtagaatattatgaaaagaatggctacaaatggtgcaatatacttaaacaaggtcattgtacttggataaaagtgcatgctat |
206 |
Q |
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| T |
13272866 |
tttcgtctccatatattgtagaatattatgaaaagaatggctacaaatggtgcaatatacttaaacaaggtcattgtacttggacaaaagtgcatgctat |
13272965 |
T |
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| Q |
207 |
tca |
209 |
Q |
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||| |
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| T |
13272966 |
tca |
13272968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 12962923 - 12962759
Alignment:
| Q |
16 |
taaggtaacaaaatcatggatattggatatattttgtaacattgatggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctc |
115 |
Q |
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| T |
12962923 |
taaggttacaaaatcatgaatattggattgattatgcaaaactgatggtaacatgccaataattggccaatttggtagaagttcatttttgtttcgtctc |
12962824 |
T |
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| Q |
116 |
catatattgtagaatattatgaaaagaatggctacaaatggtgcaatatacttaaacaaggtcattgt |
183 |
Q |
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| T |
12962823 |
catatattgtgcaa---tatgaagagaattgttacaaataatgcaatatactgaaacaaggtcattgt |
12962759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 13079855 - 13079727
Alignment:
| Q |
59 |
gatggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctccatatattgtagaatattatgaaaagaatggctacaaatggtg |
158 |
Q |
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| T |
13079855 |
gatggcagcatgccaattattggccaatttggaacaagtacatttttgttgcgcctccatatattgtatgatatgatgaagagaattgctacaaataatg |
13079756 |
T |
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| Q |
159 |
caatatacttaaacaaggtcattgtactt |
187 |
Q |
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| T |
13079755 |
taatatactgaaacaaggtcatagtactt |
13079727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 13087340 - 13087462
Alignment:
| Q |
60 |
atggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctccatatattgtagaatattatgaaaagaatggctacaaatggtgc |
159 |
Q |
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| T |
13087340 |
atggtagcatgccaattattggccaatttgttacaagtacattttggttgcgtctccatatatagtaaaatatgactagtagaattgctacaaataatgt |
13087439 |
T |
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| Q |
160 |
aatatacttaaacaaggtcattg |
182 |
Q |
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| T |
13087440 |
aatatactgaaacaaagtcattg |
13087462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 13192643 - 13192808
Alignment:
| Q |
18 |
aggtaacaaaatcatggatattggatatattttgtaacattgatggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctcca |
117 |
Q |
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| T |
13192643 |
aggttacaaaatcatgaagattggattgattatgcaaaactaatggtagcatgccaattattggccaatttgttagaagtacattttggttgcgtttcca |
13192742 |
T |
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| Q |
118 |
tatattgtagaatattatgaaaagaatggctacaaatggtgcaatatacttaaacaaggtcattgt |
183 |
Q |
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| T |
13192743 |
tgtattgtaaaacatgaagaggagaatggctacaaataatgcaatatactgaaacaaaatcattgt |
13192808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 19278138 - 19277997
Alignment:
| Q |
58 |
tgatggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctccatatattgtagaatattatgaaaagaatggctacaaatggt |
157 |
Q |
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| T |
19278138 |
tgatggtagcatgccaattattggccaatttggtagagttacattttttttgcttctcgatatattgtaaaatatgatgaagagaattgctaaaaacaat |
19278039 |
T |
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| Q |
158 |
gcaatatacttaaacaaggtcattgtacttggataaaagtgc |
199 |
Q |
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| T |
19278038 |
gtaatataatgaaacatggtagttgtacttagacaaaagtgc |
19277997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 13243514 - 13243424
Alignment:
| Q |
59 |
gatggtagcataccaattattggccaatttggtacaagttcatttttgtttcgtctccatatattgtagaatattatgaaaagaatggcta |
149 |
Q |
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| T |
13243514 |
gatggtaccatgccaatgattggccagtttggtataattttatttttgttgtgtctccatatattgtaaaatatgatgaagagaattgcta |
13243424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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