View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_high_11 (Length: 232)
Name: NF13908_high_11
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37602584 - 37602353
Alignment:
| Q |
1 |
atatgaaagaagaaaaaacttcagaatttaagatgaaattatgtagaatgtgaaatgctaatactgtgcatgtgtaacattnnnnnnnccaagatgnnnn |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37602584 |
atatgaaagaagaaaaaaattcagaatttaagatgaaattatgtagaatgtgaaatgctaatactgtgcatgtgtaacattaaaaaaaccaagatgaaaa |
37602485 |
T |
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| Q |
101 |
nnngtacccccacttgttaatatattacttgcatgaaatcctacttactgttttctagaatctagaacagttaattaagataatggcttattataataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37602484 |
aaagtacccccacttgttaatatattacttgcatgaaatcctaattactgttttctagaatctagaacagttaattaagataatggcttattataataaa |
37602385 |
T |
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| Q |
201 |
ctacctcgtcctcactgaatctaccagcagta |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37602384 |
ctacctcgtcctcactgaatctaccagcagta |
37602353 |
T |
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