View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_high_12 (Length: 224)
Name: NF13908_high_12
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36524326 - 36524107
Alignment:
| Q |
1 |
cggatggttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgaaagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524326 |
cggatggttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgaaagta |
36524227 |
T |
|
| Q |
101 |
ttgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagcctt--ttttgttattgttatttttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36524226 |
ttgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagccttttttttgttattgttatttttg |
36524127 |
T |
|
| Q |
199 |
tatcttcggttgagaattat |
218 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36524126 |
tatcttcggttgagaattat |
36524107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 1091723 - 1091488
Alignment:
| Q |
8 |
ttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttg------------- |
94 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091723 |
ttatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttgtg |
1091624 |
T |
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| Q |
95 |
--aaagta----ttgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagcct------ttttt |
182 |
Q |
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| T |
1091623 |
ataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatttgcaaaaactctgttatggcggctacaaaagcctattttgttatt |
1091524 |
T |
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| Q |
183 |
gttattgttatttttgtatcttcggttgagaattat |
218 |
Q |
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| T |
1091523 |
gttattgttatttttgtatcttcgcttgagaattat |
1091488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 18095972 - 18095854
Alignment:
| Q |
100 |
attgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagccttttttgttattgttatttttgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18095972 |
attgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaagccttttttgttattgttatttttgt |
18095873 |
T |
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| Q |
200 |
atcttcggttgagaattat |
218 |
Q |
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|||||||| |||||||||| |
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| T |
18095872 |
atcttcggctgagaattat |
18095854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 18100269 - 18100151
Alignment:
| Q |
100 |
attgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagccttttttgttattgttatttttgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18100269 |
attgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaagccttttttgttattgttatttttgt |
18100170 |
T |
|
| Q |
200 |
atcttcggttgagaattat |
218 |
Q |
| |
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|||||||| |||||||||| |
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|
| T |
18100169 |
atcttcggctgagaattat |
18100151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18096091 - 18096010
Alignment:
| Q |
1 |
cggatggttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactgga-ggtatcaagaataaataattca |
81 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
18096091 |
cggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattca |
18096010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18100388 - 18100307
Alignment:
| Q |
1 |
cggatggttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactgga-ggtatcaagaataaataattca |
81 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
18100388 |
cggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattca |
18100307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 12820799 - 12820847
Alignment:
| Q |
171 |
aaagccttttt-tgttattgttatttttgtatcttcggttgagaattat |
218 |
Q |
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||||||||||| ||||||||||| | ||||||||||| ||||||||||| |
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| T |
12820799 |
aaagcctttttgtgttattgttactcttgtatcttcgtttgagaattat |
12820847 |
T |
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