View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13908_high_4 (Length: 521)
Name: NF13908_high_4
Description: NF13908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13908_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 224 - 474
Target Start/End: Complemental strand, 769544 - 769294
Alignment:
| Q |
224 |
gggaatccaccattaannnnnnnactcaatttttatgttaataactcatcttacttttttctttattcaacgagattgaatctacatgaaaaccattttt |
323 |
Q |
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| T |
769544 |
gggaatccaccattaatttttttactcaatttttatgttaataactcatcctacttttttctttaatcaacgagattgaatctacatgaaaaccattttt |
769445 |
T |
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| Q |
324 |
ctatatgatgaaatggaacatatgtgaaagacatgatggaaaataattggggatccattccttatttcggatatagtacataactgtggatgtacttcaa |
423 |
Q |
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| T |
769444 |
ctatatgatgaaatggaacatatgtgaaagacatgatggaaaataattggggatccattccttatttcggatatagtacataactgtggatgtacttcaa |
769345 |
T |
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| Q |
424 |
acatatcgaagttaatgtcattgtctttgtctacttatcatgattgtactt |
474 |
Q |
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| T |
769344 |
acatatcgaagtcaatgtgattgtctttgtctacttatcgtgattgtactt |
769294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 769769 - 769581
Alignment:
| Q |
1 |
tcttttgaaatacctattgggataatctt--gtgtacatgtttcgacatagttgtagacttctagtaccatcctggtttatgttaggtgaaatcacattg |
98 |
Q |
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| T |
769769 |
tcttttgaaatacctattgggataatcttttgtgtacatgtttcgacatagttgtagacttctagtaccatcctggtttatgttaggtgaaatcacattg |
769670 |
T |
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| Q |
99 |
cgttgaaagtattttagttttatatcatgctttgagtaacagtagaaaaagtttccattgaatcaaactatgttttatctattcctgcg |
187 |
Q |
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| T |
769669 |
cgttgaaagtattttagttttatatcatgctttgagtaacagtagaaaaagtttccattgaatcaaactatgttttatctattcctgcg |
769581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 520
Target Start/End: Complemental strand, 769314 - 769281
Alignment:
| Q |
487 |
ctacttatcgtgattgtactttaaacgtatttat |
520 |
Q |
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| T |
769314 |
ctacttatcgtgattgtactttaaacgtgtttat |
769281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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